Enhance YearlyReportForm to include counts of females and males with … #1713
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| --- | |
| name: Create packages | |
| on: | |
| push: | |
| tags: | |
| - "v*" # Trigger on version tags | |
| branches: | |
| - "main" | |
| - "master" | |
| - "develop" | |
| - "production" | |
| - "test-prod" | |
| paths-ignore: | |
| - "**.md" | |
| - "docs/**" | |
| - ".gitignore" | |
| - "LICENSE" | |
| jobs: | |
| changes: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| frontend: ${{ steps.filter.outputs.frontend }} | |
| main: ${{ steps.filter.outputs.main }} | |
| r-api: ${{ steps.filter.outputs.r-api }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: dorny/paths-filter@v2 | |
| id: filter | |
| with: | |
| filters: | | |
| frontend: | |
| - 'frontend/**' | |
| - '.docker/frontend' | |
| main: | |
| - 'app/**' | |
| - '.docker/main' | |
| r-api: | |
| - 'R/**' | |
| - '.docker/r-api' | |
| build: | |
| needs: changes | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Update tags.json version | |
| uses: jossef/action-set-json-field@v2.1 | |
| with: | |
| file: frontend/src/tags.json | |
| field: gitBranch | |
| value: ${{ github.ref_name }} | |
| - name: Login to GitHub Container Registry | |
| uses: docker/login-action@v2 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ secrets.GHCR_USER }} | |
| password: ${{ secrets.GHCR_PAT }} | |
| - name: Prepare .docker files | |
| run: | | |
| for p in .docker/*.default ; do | |
| mv "$p" "${p%.default}" | |
| done | |
| # Pull existing images for layer caching | |
| - name: Pull existing images | |
| run: | | |
| # Sanitize branch name for docker tags | |
| branch="${{ github.ref_name }}" | |
| safe_branch="${branch//\//-}" # Replace / with - | |
| for image in herdbook_r-api herdbook_main herdbook_frontend; do | |
| docker pull "ghcr.io/nbisweden/$image:latest" || true | |
| docker pull "ghcr.io/nbisweden/$image:$safe_branch" || true | |
| done | |
| # Build images using docker compose | |
| - name: Build images | |
| env: | |
| DOCKER_BUILDKIT: 1 | |
| COMPOSE_DOCKER_CLI_BUILD: 1 | |
| run: | | |
| # For tags, we rebuild frontend and main with the correct version | |
| # For production, we build fresh | |
| # For other branches, we build only changed components | |
| if [[ "${{ github.ref_type }}" == "tag" ]]; then | |
| echo "Tag detected - rebuilding frontend and main with version ${{ github.ref_name }}" | |
| # Pull production image for r-api | |
| docker pull "ghcr.io/nbisweden/herdbook_r-api:production" | |
| # Build frontend and main with new version | |
| docker compose build --build-arg BUILDKIT_INLINE_CACHE=1 \ | |
| --build-arg COMMIT_SHA="${{ github.sha }}" \ | |
| herdbook-frontend main | |
| elif [[ "${{ github.ref_name }}" == "production" ]]; then | |
| echo "Production branch - building fresh images" | |
| docker compose build --no-cache --build-arg BUILDKIT_INLINE_CACHE=1 \ | |
| --build-arg COMMIT_SHA="${{ github.sha }}" \ | |
| herdbook-frontend main | |
| else | |
| # For other branches, only build changed images and their dependents | |
| if [[ "${{ needs.changes.outputs.frontend }}" == "true" ]]; then | |
| docker compose build --build-arg BUILDKIT_INLINE_CACHE=1 \ | |
| --build-arg COMMIT_SHA="${{ github.sha }}" \ | |
| herdbook-frontend main | |
| elif [[ "${{ needs.changes.outputs.main }}" == "true" ]]; then | |
| docker compose build --build-arg BUILDKIT_INLINE_CACHE=1 \ | |
| --build-arg COMMIT_SHA="${{ github.sha }}" \ | |
| main | |
| fi | |
| if [[ "${{ needs.changes.outputs.r-api }}" == "true" ]]; then | |
| docker compose build --build-arg BUILDKIT_INLINE_CACHE=1 r-api | |
| fi | |
| fi | |
| # Push images | |
| - name: Push images | |
| run: | | |
| # Sanitize branch name for docker tags | |
| branch="${{ github.ref_name }}" | |
| safe_branch="${branch//\//-}" # Replace / with - | |
| # Function to push an image if it was built or if we're tagging | |
| push_if_built() { | |
| local image="$1" | |
| local is_tag="${2:-false}" | |
| # For tags, try to pull the production image first and verify commit SHA | |
| if [[ "$is_tag" == "true" ]]; then | |
| echo "Pulling production image for $image..." | |
| docker pull "ghcr.io/nbisweden/$image:production" || { echo "Failed to pull production image"; return 1; } | |
| # Extract commit SHA from production image label | |
| prod_sha=$(docker inspect "ghcr.io/nbisweden/$image:production" --format '{{index .Config.Labels "org.opencontainers.image.revision"}}') | |
| current_sha="${{ github.sha }}" | |
| echo "Production image commit: $prod_sha" | |
| echo "Tag commit: $current_sha" | |
| if [[ "$prod_sha" != "$current_sha" ]]; then | |
| echo "Error: Production image was not built from the same commit as this tag" | |
| echo "Production commit: $prod_sha" | |
| echo "Tag commit: $current_sha" | |
| return 1 | |
| fi | |
| docker tag "ghcr.io/nbisweden/$image:production" "$image:latest" | |
| fi | |
| if docker image inspect "$image:latest" >/dev/null 2>&1; then | |
| docker tag "$image:latest" "ghcr.io/nbisweden/$image:$safe_branch" | |
| docker push "ghcr.io/nbisweden/$image:$safe_branch" | |
| if [[ "${{ github.ref_type }}" == "tag" || "$branch" == "main" || "$branch" == "master" || "$branch" == "develop" || "$branch" == "production" || "$branch" == "test-prod" ]]; then | |
| docker tag "$image:latest" "ghcr.io/nbisweden/$image:latest" | |
| docker push "ghcr.io/nbisweden/$image:latest" | |
| fi | |
| fi | |
| } | |
| # For tags, retag production images. For production, push built images | |
| if [[ "${{ github.ref_type }}" == "tag" ]]; then | |
| # Frontend and main were rebuilt with new version | |
| push_if_built "herdbook_frontend" | |
| push_if_built "herdbook_main" | |
| # R-API uses production image | |
| docker tag "ghcr.io/nbisweden/herdbook_r-api:production" "ghcr.io/nbisweden/herdbook_r-api:$safe_branch" | |
| docker tag "ghcr.io/nbisweden/herdbook_r-api:production" "ghcr.io/nbisweden/herdbook_r-api:latest" | |
| docker push "ghcr.io/nbisweden/herdbook_r-api:$safe_branch" | |
| docker push "ghcr.io/nbisweden/herdbook_r-api:latest" | |
| elif [[ "${{ github.ref_name }}" == "production" ]]; then | |
| push_if_built "herdbook_frontend" | |
| push_if_built "herdbook_main" | |
| else | |
| # For other branches, push only the images that were built | |
| if [[ "${{ needs.changes.outputs.frontend }}" == "true" ]]; then | |
| push_if_built "herdbook_frontend" | |
| fi | |
| if [[ "${{ needs.changes.outputs.main }}" == "true" || "${{ needs.changes.outputs.frontend }}" == "true" ]]; then | |
| push_if_built "herdbook_main" | |
| fi | |
| if [[ "${{ needs.changes.outputs.r-api }}" == "true" ]]; then | |
| push_if_built "herdbook_r-api" | |
| fi | |
| fi |