v0.3.3

PhenotypeSimulator 0.3.3

Minor changes

1. Fixed bug that failed to return causal SNP name when only one SNP was chosen
   to be causal issue
   13.

PhenotypeSimulator 0.3.2 (unreleased)

Minor changes

1. Option for external, delimited genotype file to contain a header;
   additional checks to make sure the right data is received when
   sampling from the genotypes file issue 10
2. Fixed bug for reading external genotypes file issue
   9

v0.3.1

Minor update from v.0.3.0:

Adapted output file names for genotypes consistent with other filenames
from genotypes.txt to Genotypes.txt

v0.3.0

Major changes from version 0.2.2 to version 0.3:

1. Add option for non-linear transformation of simulated phenotypes: function (transformNonlinear)[https://github.com/HannahVMeyer/PhenotypeSimulator/blob/master/R/createphenotypeFunctions.R], accessible from runSimulation. Both transformed and original phenotypes are automatically returned with savePheno
2. Replace parameter 'oxgen' in readStandardGenotypes and getCausalSNPs with 'format' - ensures proper
   specification of genotype format for all cases.

Minor changes from version 0.2.2 to version 0.3

1. In addition to full kinship, savePheno and writeStandardOutput write eigenvalues and eigenvalues of kinship matrix.
2. Output file names have been made more consistent in savePheno and writeStandardOutput.
3. Causal SNPs are now also saved in specified standard output format.
4. LiMMBo has been added as output format in savePheno and writeStandardOutput(LiMMBo format)

PhenotypeSimulator 0.2.2

Update readStandardGenotypes to be compatible with latest release of data.table (v1.11.2), see here