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Feature/202410 update#40

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bolliger32 merged 103 commits intomainClimateImpactLab/geoclaw:mainfrom feature/202410-updateClimateImpactLab/geoclaw:feature/202410-updateCopy head branch name to clipboardOct 14, 2024

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Commits

Commits on Apr 14, 2024

• change nodata_value to -99999 in topotools

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• Merge pull request clawpack#599 from rjleveque/topo99999

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Commits on Apr 19, 2024

• Fix bug related to tracking pressure at gauges

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Commits on Apr 21, 2024

• Merge pull request clawpack#600 from mandli/rm-pressure-gauge-adjustment

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Commits on Apr 26, 2024

• simplify make_fgout_animation.py use of update_artists

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• use image backend Agg in make_fgout_animation.py so animation size agrees with specified figure size

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Commits on Apr 27, 2024

• set blit=False and auto-detect number of fgout frames

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• clean up make_fgout_animation.py

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• added new chile2010_fgmax-fgout/make_fgout_animation_with_transect.py

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• Add dZ_format parameter to DTopography.write function

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Commits on Apr 30, 2024

• Merge pull request clawpack#602 from rjleveque/chile2010_fgout_animation

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• Merge pull request clawpack#603 from rjleveque/dtopo_dZ_format

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Commits on May 1, 2024

• handle 0 radius

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• fix type on set_pressure

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• fix duplicate r

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Commits on May 3, 2024

• make comparison fp-safe

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Commits on May 4, 2024

• handle underflow

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Commits on May 7, 2024

• avoid underflow in wind setting too

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Commits on May 8, 2024

• point to riemann/src for Riemann solvers

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• Remove Riemann solvers from src/2d/bouss, Makefile.common points to riemann/src

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• Merge pull request clawpack#604 from ClimateImpactLab/bugfix/zero-radius

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Commits on May 10, 2024

• Initial CI GitHub action script

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• Update testing.yml

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• Add checking out of clawpack and geoclaw

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• Add lint and testing to CI

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• Disable linting for the time being

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• Re-enable linting but only for geoclaw

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• Exclude old_topotools.py

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Commits on May 17, 2024

• initial commit of xarray backends and example use file

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• Merge branch 'master' into add_xarray_backends

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• remove extra words

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Commits on May 18, 2024

• relax assumption of where command is issued (no longer needs to be in run directory).

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Commits on May 22, 2024

• Fix up gauge plotting for storm surge

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  mandli

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• Add dry gauge plotting

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Commits on May 30, 2024

• create gauge filenames that allow more than 5 digits in gauge number

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• cleaner way to zero pad only if fewer than 5 digits using I0.5 format

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• Merge pull request clawpack#615 from rjleveque/gauge_filenames

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• Merge pull request clawpack#612 from mandli/update-surge-gauge-plot

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• Cleanup and reimplement reading of ATCF and writing of GeoClaw storms

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• Minor string comparison bug fix

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• Extract name of storm from file name

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Commits on May 31, 2024

• Merge pull request clawpack#607 from rjleveque/bouss_rp

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Commits on Jun 3, 2024

• Minor tweaks and fixes

  mandli

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• Fix missing comma

  mandli

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• AutoPEP8 surge code

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Commits on Jun 5, 2024

• add more information about rioxarray

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• better import error for rioxarray

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• add B and level

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• add fgout output_style parameter and support for array of output_times

  rjleveque

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• remove trailing whitespaces in fgout_module.f990

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Commits on Jun 6, 2024

• Refactor fgout_module.f90 so it works for either GeoClaw or D-Claw

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• Use geoclaw module rho

  mandli

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• Remove module level parameters that were not needed or were specific

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  mandli

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• Initial implementation of rotation control

  mandli

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• Merge branch 'improve-storm-io' into add-hemisphere-control

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• Minor bugfixes and rearranging

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Commits on Jun 7, 2024

• Fix bugs in the non-spherical coordinates for storms"

  mandli

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Commits on Jun 10, 2024

• Merge pull request clawpack#616 from mandli/improve-storm-io

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Commits on Jun 11, 2024

• Merge pull request clawpack#617 from rjleveque/fgout_tarray

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Commits on Jun 14, 2024

• Merge branch 'clawpack:master' into add_xarray_backends

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Commits on Jun 19, 2024

• fix fgout_tools.FGoutGrid.read_fgout_grids_data for time array

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Commits on Jun 28, 2024

• Add kwargs to Topography reading

  mandli

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• Add radii to plotting options

  mandli

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• Add plotting of storm tracks

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Commits on Jul 1, 2024

• Merge pull request clawpack#621 from rjleveque/fgout_tarray_read

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• Merge branch 'clawpack:master' into add-track-plotting

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Commits on Jul 5, 2024

• add clip example

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• Merge branch 'add_xarray_backends' of https://github.com/kbarnhart/geoclaw into add_xarray_backends

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• return ds

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Commits on Jul 14, 2024

• Allow specifying which components of q to output on each fgout grid

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Commits on Jul 15, 2024

• Merge pull request clawpack#622 from mandli/add-track-plotting

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Commits on Jul 17, 2024

• working on dclaw variables

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Commits on Jul 18, 2024

• Fix fgout_tools.py to support fgout.q_out_vars also for Boussinesq or D-Claw

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• Update topo_module.f90

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• Merge pull request clawpack#625 from clawpack/lengthen-netcdf-var-names

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Commits on Jul 24, 2024

• fix data_file -> data_path

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Commits on Jul 29, 2024

• add FGoutGrid.read_fgout_grids_data_pre511 for reading legacy fgout_grids.data from before v5.11

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• add to doc string for pre511

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• print more helpful error msg if fgout_grids.data seems to be pre511

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• force user to call read_fgout_grids_data before read_frame

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• Fix chiles2010_fgmax-fgout scripts to make fgout animations

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• Leave output_format as an argument to FGoutGrids.__init__ but not that

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• fix qmap=='geoclaw-bouss' mapping

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Commits on Jul 30, 2024

• Merge pull request clawpack#624 from rjleveque/fgout_q_vars

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Commits on Aug 20, 2024

• wip

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• Merge branch 'master' into add_xarray_backends

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• first pass at using revised fgout data structure with backends.

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• add a few more comments.

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Commits on Aug 21, 2024

• name updates

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• bdiff->bdif

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• remove vestigial _qelements

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• Add example that should work with/without dask

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• improve drytol handling

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• don't specify error type.

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• switch from hard coded drytol to user-specified drytol

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• update use of dry_tolerance

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• fix exceptions.

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Commits on Aug 23, 2024

• Merge pull request clawpack#611 from kbarnhart/add_xarray_backends

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Commits on Aug 25, 2024

• update examples/tsunami/chile2010/setplot.py

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• Merge pull request clawpack#626 from rjleveque/chile2010_setplot

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• Fix src/bouss/amr2.f90 call to set_fgout, adding nvar

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Commits on Aug 26, 2024

• Merge pull request clawpack#627 from rjleveque/bouss_set_fgout_fix

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Commits on Oct 9, 2024

• Merge branch 'master' of https://github.com/clawpack/geoclaw into feature/202410-update

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