Updated docs and demos for Manuscripts

Campbell-Muscle-Lab · Jun 11, 2021 · 3bd795d · 3bd795d
1 parent eab4a39
commit 3bd795d
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diff --git a/code/FiberPy/FiberPy/FiberPy.py b/code/FiberPy/FiberPy/FiberPy.py
@@ -9,6 +9,7 @@
 from package.modules.output_handler import output_handler as oh
 from package.modules.fitting import fitting as fit
 from package.modules.visualization import render as viz
+from package.modules.visualization.create_movie import create_hs_movie as cm
 from package.modules.analysis import analysis as anal
 
 def parse_inputs():
@@ -34,6 +35,9 @@ def parse_inputs():
         an.animate_cb_distributions(
             sys.argv[2], sys.argv[3])
 
+    if (sys.argv[1] == "spatial_visualization"):
+        cm(sys.argv[2], sys.argv[3])
+
 
 if __name__ == "__main__":
     parse_inputs()
diff --git a/code/FiberPy/FiberPy/package/modules/display/analyses.py b/code/FiberPy/FiberPy/package/modules/display/analyses.py
@@ -247,7 +247,7 @@ def create_y_pCa_figure(fig_data, batch_file_string):
     dir_name = os.path.dirname(output_image_file_string)
     if (not os.path.isdir(dir_name)):
         os.makedirs(dir_name)
-    fig.savefig(output_image_file_string, dpi=100)
+    fig.savefig(output_image_file_string, dpi=200)
     plt.close()