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@iksheth iksheth released this 01 Apr 15:34
· 1434 commits to main since this release
v3.21.3-704
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Release Notes - Integrated Canine Data Commons (ICDC) - Version ICDC 3.21.3 🐶 🧬

Features

  • End User can access the GraphiQL query interface
  • Add page for Data Use Guidelines
  • Add a hyperlink for software release notes
  • End User downloads node-specific data loading templates
  • Data model/dictionary viewer displays the description and the "Assignment" and "Class" tags for each node
  • End User searches for program-specific data sets via the dashboard's facet-driven search functionality
  • System redirects End User to the Studies listing upon submission of an non-existent Accession ID
  • End user can see Resources and Data in the navigation bar
  • End user sees consistent verbiage for Data Model
  • System supports viewing of BAM files via JBrowse, alongside direct download of small, document-like files
  • End user sees expanded faceted categories
  • Add new spotlight content to highlight recent data releases
  • ICDC News tile temporarily redirects to "Coming Soon" page

Task

  • Display the File Microservice Version in the Footer
  • Update the Model Viewer to correctly handle values of "Enum:" in place of "Req:" for enumerated properties
  • Research methods to improve performance of Data Model Explorer
  • Apply the design/branding overlay to PDF exports from the Data Model Explorer
  • Explore and/or design options for a background upon which the Data Model Explorer graph view can be displayed
  • Integrate Bento code for JBrowse
  • JBrowse supports all canine reference genomes
  • JBrowse supports all available canine tracks
  • Implement logic to exclude "map to" columns for non-relevant parents from data loading templates
  • Turn off the display of the "native" node-specific tool tips within the Data Model Explorer's graph view
  • Implement the modal-based display of controlled vocabularies within the Data Model Explorer's table view
  • Implement the identification of "Key" properties
  • Remove the "cells and dogs" theming currently shown to the right of the NIH logo/text block
  • Replace the FNL text block in the footer with the corresponding NCI text block
  • Disable faceted filtering from Data Model Explorer

Improvement

  • Improve URL for "Unified View" page for Multi-Study Participation
  • Update the way in which the Data Model Explorer's table view renders controlled vocabularies
  • Modify the existing node by node PDF exports to include node descriptions and the "Assignment" and "Class" tags
  • Make the default view of the Data Model Explorer the Graph View
  • Update the way in which node-specific PDF downloads are named upon auto-save
  • Display program acronyms within the application-wide study listing as hyperlinks
  • Increase the visibility of ICDC's internal hyperlinks

Bug Fixes

  • Inconsistent separation of individual filter options available within filter categories
  • Blank Page when using an Identifiers.org ID
  • Node-specific tool tips within the Graph View of the Data Model Explorer become disconnected after altering the zoom level
  • Truncation of words on the left and right pane of GraphQL
  • Files downloaded from the Data Model Explorer are not named intuitively
  • The data volume indicator is no longer active when viewing certain pages
  • Properties for which the value of Req: is "Preferred" are now being shown as "Optional"
  • The order in which properties are displayed within the Data Model Explorer's table view doesn't match the order within PDF exports
  • "Filter by Property" inclusion options never include "Optional", but selection of "Preferred" actually displays nodes with optional properties
  • Display of the properties dialogue within the Data Model Explorer's graph view becomes erratic once filters are imposed
  • Data Model Explorer's table view "Optional" properties are being displayed as "Preferred", and vice versa
  • Case File counts are incorrectly reported by the statistics bar under certain circumstances
  • OSA01 filter includes "Bull Mastiff" as breed filter when it should appear "Bullmastiff"
  • "Preferred" properties are incorrectly being displayed as "Required" within the Data Model Explorer's PDF exports
  • Additional navigation menu items are highlighted when user clicks on Model Explorer
  • Expanding all faceted filters in Model Explorer graph view/table view blocks the NCI block in footer
  • Pagination is not displaying correctly on Dashboard tabs
  • Default sorting icon for Sample ID is missing in Samples tab
  • The selected filter options should display together without partitions
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