lionheart 1.1.0
This release adds multiple CLI commands that:
- allow reproducing results from the article and seeing the effect of adding your own datasets:
- Adds
lionheart cross_validate
command. Perform nested leave-one-dataset-out cross-validation on your dataset(s) and/or the included features. - Adds
lionheart validate
command. Validate a model on the included external dataset or a custom dataset. - Adds
lionheart evaluate_univariates
command. Evaluate each feature (cell-type) separately on your dataset(s) and/or the included features.
- expands what you can do with your own data:
- Adds
lionheart customize_thresholds
command. Calculate the ROC curve and probability densities (for deciding probability thresholds) on your data and/or the included features for a custom model or an included model. Allows using probability thresholds suited to your own data when usinglionheart predict_sample
andlionheart validate
. - Adds
--custom_threshold_dirs
argument inlionheart predict_sample
. Allows passing the ROC curves and probability densities extracted withlionheart customize_thresholds
.
Also:
- Adds
matplotlib
as dependency. - Bumps
generalize
dependency requirement to0.2.1
. - Bumps
utipy
dependency requirement to1.0.3
.