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BIMSB bioinformatics platform / Akalin Lab

git repositories for the Akalin lab

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  1. janggu janggu Public

    Deep learning infrastructure for genomics

    Jupyter Notebook 256 34

  2. genomation genomation Public

    R package for genomic feature analysis and visualization

    R 74 22

  3. compgen2021 compgen2021 Public

    R 73 23

  4. maui maui Public

    Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit

    Jupyter Notebook 49 21

  5. ikarus ikarus Public

    Identifying tumor cells at the single-cell level using machine learning

    HTML 46 12

  6. VoltRon VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    R 45 10

Repositories

Showing 10 of 106 repositories
  • anglemania Public

    Repository for the "Neuroblastoma" project, colloquailly known as anglemana; source material for a package under the same name

    BIMSBbioinfo/anglemania’s past year of commit activity
    R 0 Artistic-2.0 0 18 0 Updated Jan 8, 2025
  • VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    BIMSBbioinfo/VoltRon’s past year of commit activity
    R 45 10 2 0 Updated Jan 6, 2025
  • flexynesis Public

    A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner

    BIMSBbioinfo/flexynesis’s past year of commit activity
    Python 25 6 11 1 Updated Dec 31, 2024
  • compgen Public
    BIMSBbioinfo/compgen’s past year of commit activity
    0 1 0 0 Updated Dec 28, 2024
  • pigx_rnaseq Public

    Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline

    BIMSBbioinfo/pigx_rnaseq’s past year of commit activity
    Python 21 GPL-3.0 12 22 0 Updated Dec 27, 2024
  • oncotrialLLM Public
    BIMSBbioinfo/oncotrialLLM’s past year of commit activity
    Python 1 0 0 0 Updated Dec 26, 2024
  • ImageArray Public
    BIMSBbioinfo/ImageArray’s past year of commit activity
    R 0 1 0 0 Updated Dec 24, 2024
  • flexynesis-benchmarks Public

    Comprehensive continuous benchmarking of tools for multi-omics data integration

    BIMSBbioinfo/flexynesis-benchmarks’s past year of commit activity
    Python 1 1 2 0 Updated Dec 19, 2024
  • ZarrDataFrame Public
    BIMSBbioinfo/ZarrDataFrame’s past year of commit activity
    R 0 MIT 1 0 0 Updated Dec 15, 2024
  • ZarrArray Public

    Zarr backend for DelayedArray objects

    BIMSBbioinfo/ZarrArray’s past year of commit activity
    R 2 1 3 0 Updated Dec 15, 2024

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