AnkitMukherji / Algorithms-for-DNA-Sequencing Public

Algorithms for assembling reads to form the complete Genome

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Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
.ipynb_checkpoints		.ipynb_checkpoints
Exams		Exams
Files		Files
1.01_StringBasics.ipynb		1.01_StringBasics.ipynb
1.02_ManipulatingDNAStrings.ipynb		1.02_ManipulatingDNAStrings.ipynb
1.03_ParsingRefGenome.ipynb		1.03_ParsingRefGenome.ipynb
1.04_WorkingWithSequencingReads.ipynb		1.04_WorkingWithSequencingReads.ipynb
1.05_AnalyzingReadsByPosition.ipynb		1.05_AnalyzingReadsByPosition.ipynb
1.06_NaiveExactMatching-MatchingArtificialReads.ipynb		1.06_NaiveExactMatching-MatchingArtificialReads.ipynb
1.07_NaiveExactMatching-MatchingRealReads.ipynb		1.07_NaiveExactMatching-MatchingRealReads.ipynb
2.01_BoyerMoore.ipynb		2.01_BoyerMoore.ipynb
2.02_SubstringIndex.ipynb		2.02_SubstringIndex.ipynb
2.03_ApproximateMatching_pigeonhole.ipynb		2.03_ApproximateMatching_pigeonhole.ipynb
3.01_EditDistanceDP.ipynb		3.01_EditDistanceDP.ipynb
3.02_GlobalAlignment.ipynb		3.02_GlobalAlignment.ipynb
3.03_FindingOverlaps.ipynb		3.03_FindingOverlaps.ipynb
3.04_FindingAllOverlaps.ipynb		3.04_FindingAllOverlaps.ipynb
4.01_ShortestCommonSuperstring.ipynb		4.01_ShortestCommonSuperstring.ipynb
4.02_GreedySCS.ipynb		4.02_GreedySCS.ipynb
4.03_DeBruijn.ipynb		4.03_DeBruijn.ipynb
README.md		README.md