From cb17f29e3a3ae635aeb3873b9000a6f737a0b9a0 Mon Sep 17 00:00:00 2001 From: Steven Weaver Date: Fri, 11 Jan 2019 11:27:53 -0500 Subject: [PATCH 1/3] adding requires.txt file --- requires.txt | 3 +++ setup.py | 4 ++-- 2 files changed, 5 insertions(+), 2 deletions(-) create mode 100644 requires.txt diff --git a/requires.txt b/requires.txt new file mode 100644 index 0000000..a3c9014 --- /dev/null +++ b/requires.txt @@ -0,0 +1,3 @@ +numpy +biopython +cython diff --git a/setup.py b/setup.py index 085d930..8c8551b 100644 --- a/setup.py +++ b/setup.py @@ -25,7 +25,7 @@ def setup_package(): setup( name='hivtrace', - version='0.4.3', + version='0.4.4', description='HIV-TRACE', author='Joel Wertheim, Sergei Pond, and Steven Weaver', author_email='sweaver@temple.edu', @@ -45,7 +45,7 @@ def setup_package(): }, install_requires=[ 'biopython >= 1.58', - 'biopython-extensions >= 0.18.3', + 'bioext >= 0.19.4', 'hppy >= 0.9.9', 'tornado >= 4.3', 'hivclustering == 1.2.8', From c941a357bf1e8046d9ad31c1cdcee961acf064ea Mon Sep 17 00:00:00 2001 From: Steven Weaver Date: Fri, 11 Jan 2019 12:54:29 -0500 Subject: [PATCH 2/3] dependency and version bump --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index 8c8551b..8808f06 100644 --- a/setup.py +++ b/setup.py @@ -48,7 +48,7 @@ def setup_package(): 'bioext >= 0.19.4', 'hppy >= 0.9.9', 'tornado >= 4.3', - 'hivclustering == 1.2.8', + 'hivclustering == 1.3.2', ], entry_points={ 'console_scripts': [ From ee84befd6ded189d057198c23fefe19076dad25a Mon Sep 17 00:00:00 2001 From: Steven Weaver Date: Fri, 11 Jan 2019 12:55:13 -0500 Subject: [PATCH 3/3] dependency and version bump --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index 8808f06..2e5ed3a 100644 --- a/setup.py +++ b/setup.py @@ -25,7 +25,7 @@ def setup_package(): setup( name='hivtrace', - version='0.4.4', + version='0.4.5', description='HIV-TRACE', author='Joel Wertheim, Sergei Pond, and Steven Weaver', author_email='sweaver@temple.edu',