SAPv1.Rmd

---
title: Statistical Analysis Plan
subtitle: version 
author: 
date: '`r strftime(Sys.time(),format="%d-%b-%Y at %H:%M")`'
params:
  datafile: 
output:
  word_document:
    reference_docx: R:/CRU Epibiostat/projects/Mary-Ann/SAP/TemplateStatisticalAnalysisPlan.docx
---


```{r setup child, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
```

```{r, warning=FALSE, message=FALSE, include=FALSE}
library(tidyr)
library(dplyr)
library(CRUmisc)
library(CRUmarkdown)
library(vtree)
```


```{r  Changes to SAP, results="asis",echo=FALSE}
cat("
## Describe changes from last version and provide reason(s): 
")
```


```{r Study Name and ID, results="asis",echo=FALSE}
cat("

## Study Name and Project ID:  

")
```


```{r Timelines, results="asis",echo=FALSE}
cat("

## Key dates/timelines:

")
```

```{r Team, results="asis",echo=FALSE}
cat("

## Research Team:

#### Principal Investigator(s):
#### Co-Investigator(s):
#### Primary Contact: 
 
")
```

```{r Objectives and Outcomes, results="asis",echo=FALSE}
cat("

## Research objectives: 

### Primary outcome: 

### Secondary outcome(s): 

")
```

```{r Target Audience, results="asis",echo=FALSE}
cat("


### Target Journal: 
### Target Forum (presentation, abstract): 

")
```


```{r Planned Analyses, results="asis",echo=FALSE}
cat("

## Planned Analyses: 

")
```

# Some Sample Tables:

## Table 1.i. Demographics/Clinical Characteristics (1 group)

**Variable** | **Value**
---------------------|---------------
   |  |
   |  |
   |  |
   |  |
   
\newline   

## Table 1.ii. Demographics/Clinical Characteristics (2 groups)

**Variable** | **Group 1**  | **Group 2**
---------------------|---------------|---------------
   |   |   |
   |   |   |
   |   |   |
   |   |   |
   

#########

```{r,results="asis",echo=FALSE}
cat("		
> Notes:

>> The Statistical Analysis Plan will need to be revised in the event of:

>> - updates to the study data.

>> -	deviations from the planned analyses during the analysis phase of the project.


>> Such changes will substantially lengthen timelines.	
					
")					

```