diff --git a/CITATION.cff b/CITATION.cff
index 7966bb8..900c691 100644
--- a/CITATION.cff
+++ b/CITATION.cff
@@ -22,6 +22,21 @@ authors:
given-names: Simon R
email: simon.parker1471@outlook.com
orcid: https://orcid.org/0009-0003-8214-4496
+preferred-citation:
+ type: manual
+ title: 'gigs: Assess Fetal, Newborn, and Child Growth with International Standards'
+ authors:
+ - family-names: Parker
+ given-names: Simon R
+ email: simon.parker1471@outlook.com
+ orcid: https://orcid.org/0009-0003-8214-4496
+ - family-names: Vesel
+ given-names: Linda
+ - family-names: Ohuma
+ given-names: Eric O
+ year: '2024'
+ notes: 0.4.1.9002
+ url: https://github.com/ropensci/gigs/
repository-code: https://github.com/ropensci/gigs
url: https://github.com/ropensci/gigs/
contact:
@@ -330,21 +345,6 @@ references:
email: garnier@njit.edu
year: '2024'
doi: 10.32614/CRAN.package.viridis
-- type: software
- title: mfp
- abstract: 'mfp: Multivariable Fractional Polynomials'
- notes: Suggests
- url: https://github.com/georgheinze/mfp/issues/
- repository: https://CRAN.R-project.org/package=mfp
- authors:
- - family-names: Ambler
- given-names: Gareth
- email: gareth@stats.ucl.ac.uk
- - family-names: Benner
- given-names: Axel
- email: benner@dkfz.de
- year: '2024'
- doi: 10.32614/CRAN.package.mfp
- type: software
title: tidyr
abstract: 'tidyr: Tidy Messy Data'
diff --git a/README.Rmd b/README.Rmd
index f314367..0e6669c 100644
--- a/README.Rmd
+++ b/README.Rmd
@@ -434,12 +434,10 @@ standards are implemented but not others.
| `r zanthro` | Stata | `r yes` | `r no` | `r no` | `r no` | Values `r rarr` z-scores/centiles |
| `r gigs_sas` | SAS | `r yes` | `r yes` | `r yes` | `r yes` | Values `r harr` z-scores/centiles |
-We have benchmarked these implementations (excluding **gigs** for SAS) against
-each other for conversion of values to z-scores in the WHO Child Growth
-Standards and different sets of `r intergrowth21st` standards. The table below
-shows the relative speed of each software package when processing 100,000
-inputs. The code used to generate these timings can be seen online in the
-**gigs** benchmarking
+We have benchmarked these implementations against each other for conversion of values to z-scores in the WHO Child Growth Standards and different sets of
+`r intergrowth21st` standards. The table below shows the relative speed of each
+software package when processing 100,000 inputs. The code used to generate these
+timings can be seen online in the **gigs** benchmarking
[article](https://ropensci.github.io/gigs/articles/benchmarking.html).
| Software | Platform | WHO (0-5 years) (ms) | `r ig21st` NBS (ms) | `r ig21st` PNG (ms) | `r ig21st` Fetal (ms) |
diff --git a/README.md b/README.md
index f4c5201..869acd6 100644
--- a/README.md
+++ b/README.md
@@ -270,29 +270,29 @@ and INTERGROWTH-21st project:
Component standards
- | Acronym | Description | Unit | `x` range |
- |-----------|--------------------------------------------------------------|------|-----------------|
- | `hcfga` | head circumference-for-GA | mm | 98 to 280 days |
- | `bpdfga` | biparietal diameter-for-GA | mm | 98 to 280 days |
- | `acfga` | abdominal circumference-for-GA | mm | 98 to 280 days |
- | `flfga` | femur length-for-GA | mm | 98 to 280 days |
- | `ofdfga` | occipito-frontal diameter for-GA | mm | 98 to 280 days |
- | `efwfga` | estimated fetal weight-for-GA | g | 154 to 280 days |
- | `sfhfga` | symphisis-fundal height-for-GA | mm | 112 to 294 days |
- | `crlfga` | crown-rump length-for-GA | mm | 58 to 105 days |
- | `gafcrl` | GA-for-crown-rump length | days | 15 to 95 mm |
- | `gwgfga` | gestational weight gain-for-GA | kg | 98 to 280 days |
- | `pifga` | pulsatility index-for-GA | | 168 to 280 days |
- | `rifga` | resistance index-for-GA | | 168 to 280 days |
- | `sdrfga` | systolic/diastolic ratio-for-GA | | 168 to 280 days |
- | `tcdfga` | transcerebellar diameter-for-GA | mm | 98 to 280 days |
- | `tcdfga` | GA-for-transcerebellar diameter | mm | 98 to 280 days |
- | `poffga` | parietal-occipital fissure-for-GA | mm | 105 to 252 days |
- | `sffga` | Sylvian fissue-for-GA | mm | 105 to 252 days |
- | `avfga` | anterior horn of the lateral ventricle-for-GA | mm | 105 to 252 days |
- | `pvfga` | atrium of the posterior horn of the lateral ventricle-for-GA | mm | 105 to 252 days |
- | `cmfga` | cisterna magna-for-GA | mm | 105 to 252 days |
- | `hefwfga` | Hadlock estimated fetal weight-for-GA | g | 126 to 287 days |
+ | Acronym | Description | Unit | `x` range |
+ |----|----|----|----|
+ | `hcfga` | head circumference-for-GA | mm | 98 to 280 days |
+ | `bpdfga` | biparietal diameter-for-GA | mm | 98 to 280 days |
+ | `acfga` | abdominal circumference-for-GA | mm | 98 to 280 days |
+ | `flfga` | femur length-for-GA | mm | 98 to 280 days |
+ | `ofdfga` | occipito-frontal diameter for-GA | mm | 98 to 280 days |
+ | `efwfga` | estimated fetal weight-for-GA | g | 154 to 280 days |
+ | `sfhfga` | symphisis-fundal height-for-GA | mm | 112 to 294 days |
+ | `crlfga` | crown-rump length-for-GA | mm | 58 to 105 days |
+ | `gafcrl` | GA-for-crown-rump length | days | 15 to 95 mm |
+ | `gwgfga` | gestational weight gain-for-GA | kg | 98 to 280 days |
+ | `pifga` | pulsatility index-for-GA | | 168 to 280 days |
+ | `rifga` | resistance index-for-GA | | 168 to 280 days |
+ | `sdrfga` | systolic/diastolic ratio-for-GA | | 168 to 280 days |
+ | `tcdfga` | transcerebellar diameter-for-GA | mm | 98 to 280 days |
+ | `tcdfga` | GA-for-transcerebellar diameter | mm | 98 to 280 days |
+ | `poffga` | parietal-occipital fissure-for-GA | mm | 105 to 252 days |
+ | `sffga` | Sylvian fissue-for-GA | mm | 105 to 252 days |
+ | `avfga` | anterior horn of the lateral ventricle-for-GA | mm | 105 to 252 days |
+ | `pvfga` | atrium of the posterior horn of the lateral ventricle-for-GA | mm | 105 to 252 days |
+ | `cmfga` | cisterna magna-for-GA | mm | 105 to 252 days |
+ | `hefwfga` | Hadlock estimated fetal weight-for-GA | g | 126 to 287 days |
- `who_gs` - WHO Child Growth Standards for term infants
@@ -455,41 +455,41 @@ package, a red cross (❌) indicates that these standards are completely
missing, and a warning sign (⚠️) indicates that some of these standards
are implemented but not others.
-| Software | Platform | WHO (0-5 years) | IG-21st NBS | IG-21st PNG | IG-21st Fetal | Functionality |
-|-------------------------------------------------------------------------------------|----------|-----------------|------------------------|------------------------|--------------------------|----------------------------|
-| [gigs](https://www.github.com/ropensci/gigs/) | R | ✅ | ✅ | ✅ | ✅ | Values ↔ z-scores/centiles |
-| [anthro](https://cran.r-project.org/web/packages/anthro/index.html) | R | ✅ | ❌ | ❌ | ❌ | Values → z-scores |
-| [AGD](https://cran.r-project.org/web/packages/AGD/index.html) | R | ✅ | ❌ | ❌ | ❌ | Values ↔ z-scores |
-| [childsds](https://cran.r-project.org/web/packages/childsds/index.html) | R | ✅ | ❌ | ❌ | ❌ | Values → z-scores/centiles |
-| [ki-tools/growthstandards](https://www.github.com/ki-tools/growthstandards/) | R | ✅ | ✅ | ⚠️ | ⚠️ | Values ↔ z-scores/centiles |
-| [nutriverse/intergrowth](https://github.com/nutriverse/intergrowth/) | R | ❌ | ❌ | ❌ | ⚠️ | Values → z-scores/centiles |
-| [sitar](https://cran.r-project.org/web/packages/sitar/index.html) | R | ✅ | ❌ | ❌ | ❌ | Values ↔ z-scores/centiles |
-| [zscorer](https://cran.r-project.org/web/packages/zscorer/index.html) | R | ✅ | ❌ | ❌ | ❌ | Values → z-scores/centiles |
-| [gigs](https://www.github.com/ropensci/gigs-stata/) (Stata) | Stata | ✅ | ✅ | ✅ | ✅ | Values ↔ z-scores/centiles |
-| [zanthro](https://journals.sagepub.com/doi/epdf/10.1177/1536867X1301300211) (Stata) | Stata | ✅ | ❌ | ❌ | ❌ | Values → z-scores/centiles |
-| [gigs](https://github.com/SASPAC/gigs/) (SAS) | SAS | ✅ | ✅ | ✅ | ✅ | Values ↔ z-scores/centiles |
-
-We have benchmarked these implementations (excluding **gigs** for SAS)
-against each other for conversion of values to z-scores in the WHO Child
-Growth Standards and different sets of INTERGROWTH-21st
-standards. The table below shows the relative speed of each software
-package when processing 100,000 inputs. The code used to generate these
-timings can be seen online in the **gigs** benchmarking
+| Software | Platform | WHO (0-5 years) | IG-21st NBS | IG-21st PNG | IG-21st Fetal | Functionality |
+|----|----|----|----|----|----|----|
+| [gigs](https://www.github.com/ropensci/gigs/) | R | ✅ | ✅ | ✅ | ✅ | Values ↔ z-scores/centiles |
+| [anthro](https://cran.r-project.org/web/packages/anthro/index.html) | R | ✅ | ❌ | ❌ | ❌ | Values → z-scores |
+| [AGD](https://cran.r-project.org/web/packages/AGD/index.html) | R | ✅ | ❌ | ❌ | ❌ | Values ↔ z-scores |
+| [childsds](https://cran.r-project.org/web/packages/childsds/index.html) | R | ✅ | ❌ | ❌ | ❌ | Values → z-scores/centiles |
+| [ki-tools/growthstandards](https://www.github.com/ki-tools/growthstandards/) | R | ✅ | ✅ | ⚠️ | ⚠️ | Values ↔ z-scores/centiles |
+| [nutriverse/intergrowth](https://github.com/nutriverse/intergrowth/) | R | ❌ | ❌ | ❌ | ⚠️ | Values → z-scores/centiles |
+| [sitar](https://cran.r-project.org/web/packages/sitar/index.html) | R | ✅ | ❌ | ❌ | ❌ | Values ↔ z-scores/centiles |
+| [zscorer](https://cran.r-project.org/web/packages/zscorer/index.html) | R | ✅ | ❌ | ❌ | ❌ | Values → z-scores/centiles |
+| [gigs](https://www.github.com/ropensci/gigs-stata/) (Stata) | Stata | ✅ | ✅ | ✅ | ✅ | Values ↔ z-scores/centiles |
+| [zanthro](https://journals.sagepub.com/doi/epdf/10.1177/1536867X1301300211) (Stata) | Stata | ✅ | ❌ | ❌ | ❌ | Values → z-scores/centiles |
+| [gigs](https://github.com/SASPAC/gigs/) (SAS) | SAS | ✅ | ✅ | ✅ | ✅ | Values ↔ z-scores/centiles |
+
+We have benchmarked these implementations against each other for
+conversion of values to z-scores in the WHO Child Growth Standards and
+different sets of INTERGROWTH-21st standards. The table below
+shows the relative speed of each software package when processing
+100,000 inputs. The code used to generate these timings can be seen
+online in the **gigs** benchmarking
[article](https://ropensci.github.io/gigs/articles/benchmarking.html).
-| Software | Platform | WHO (0-5 years) (ms) | IG-21st NBS (ms) | IG-21st PNG (ms) | IG-21st Fetal (ms) |
-|-------------------------------------------------------------------------------------|----------|----------------------|-----------------------------|-----------------------------|-------------------------------|
-| [gigs](https://www.github.com/ropensci/gigs/) | R | 103 | 84 | 23 | 9 |
-| [anthro](https://cran.r-project.org/web/packages/anthro/index.html) | R | 2274 | ❌ | ❌ | ❌ |
-| [AGD](https://cran.r-project.org/web/packages/AGD/index.html) | R | 122 | ❌ | ❌ | ❌ |
-| [childsds](https://cran.r-project.org/web/packages/childsds/index.html) | R | 128 | ❌ | ❌ | ❌ |
-| [ki-tools/growthstandards](https://www.github.com/ki-tools/growthstandards/) | R | 92 | 73 | 42 | 11 |
-| [nutriverse/intergrowth](https://github.com/nutriverse/intergrowth/) | R | ❌ | ❌ | ❌ | 17 |
-| [sitar](https://cran.r-project.org/web/packages/sitar/index.html) | R | 46 | ❌ | ❌ | ❌ |
-| [zscorer](https://cran.r-project.org/web/packages/zscorer/index.html) | R | NA | ❌ | ❌ | ❌ |
-| [gigs](https://www.github.com/ropensci/gigs-stata/) (Stata) | Stata | 348 | 377 | 109 | 57 |
-| [zanthro](https://journals.sagepub.com/doi/epdf/10.1177/1536867X1301300211) (Stata) | Stata | 1059 | ❌ | ❌ | ❌ |
-| [gigs](https://github.com/SASPAC/gigs/) (SAS) | SAS | 181 | 184 | 88 | 87 |
+| Software | Platform | WHO (0-5 years) (ms) | IG-21st NBS (ms) | IG-21st PNG (ms) | IG-21st Fetal (ms) |
+|----|----|----|----|----|----|
+| [gigs](https://www.github.com/ropensci/gigs/) | R | 103 | 84 | 23 | 9 |
+| [anthro](https://cran.r-project.org/web/packages/anthro/index.html) | R | 2274 | ❌ | ❌ | ❌ |
+| [AGD](https://cran.r-project.org/web/packages/AGD/index.html) | R | 122 | ❌ | ❌ | ❌ |
+| [childsds](https://cran.r-project.org/web/packages/childsds/index.html) | R | 128 | ❌ | ❌ | ❌ |
+| [ki-tools/growthstandards](https://www.github.com/ki-tools/growthstandards/) | R | 92 | 73 | 42 | 11 |
+| [nutriverse/intergrowth](https://github.com/nutriverse/intergrowth/) | R | ❌ | ❌ | ❌ | 17 |
+| [sitar](https://cran.r-project.org/web/packages/sitar/index.html) | R | 46 | ❌ | ❌ | ❌ |
+| [zscorer](https://cran.r-project.org/web/packages/zscorer/index.html) | R | NA | ❌ | ❌ | ❌ |
+| [gigs](https://www.github.com/ropensci/gigs-stata/) (Stata) | Stata | 348 | 377 | 109 | 57 |
+| [zanthro](https://journals.sagepub.com/doi/epdf/10.1177/1536867X1301300211) (Stata) | Stata | 1059 | ❌ | ❌ | ❌ |
+| [gigs](https://github.com/SASPAC/gigs/) (SAS) | SAS | 181 | 184 | 88 | 87 |
Note: `zscorer` is NA because we couldn’t time it for 100,000 inputs (it
takes too long).
diff --git a/codemeta.json b/codemeta.json
index 44639b2..bdea22f 100644
--- a/codemeta.json
+++ b/codemeta.json
@@ -14,7 +14,7 @@
"name": "R",
"url": "https://r-project.org"
},
- "runtimePlatform": "R version 4.3.3 (2024-02-29 ucrt)",
+ "runtimePlatform": "R version 4.4.1 (2024-06-14 ucrt)",
"author": [
{
"@type": "Person",
@@ -294,7 +294,7 @@
},
"SystemRequirements": null
},
- "fileSize": "2268.053KB",
+ "fileSize": "2264.11KB",
"citation": [
{
"@type": "SoftwareSourceCode",
@@ -318,7 +318,7 @@
],
"name": "{gigs}: Assess Fetal, Newborn, and Child Growth with International Standards",
"url": "https://github.com/ropensci/gigs/",
- "description": "0.5.1.9000"
+ "description": "0.4.1.9002"
}
],
"releaseNotes": "https://github.com/ropensci/gigs/blob/master/NEWS.md",
diff --git a/man/figures/README-example_zp2v_curves-1.png b/man/figures/README-example_zp2v_curves-1.png
index 6eb4253..b0c8cd4 100644
Binary files a/man/figures/README-example_zp2v_curves-1.png and b/man/figures/README-example_zp2v_curves-1.png differ