diff --git a/go_cc_import.owl b/go_cc_import.owl new file mode 100644 index 00000000..886367d8 --- /dev/null +++ b/go_cc_import.owl @@ -0,0 +1,142 @@ + + + + + + + + + + + + + + nucleus + + + + + + + + + biological_process + + + + + + + + + + membrane + + + + + + + + axon + + + + + + + + + + dendrite + + + + + + + + + + presynaptic membrane + + + + + + + + + + cell projection + + + + + + + + + + neuron projection + + + + + + + + + synapse part + + + + + + + + + + cell part + + + + + + + + + + synapse + + + + + + + + + + + postsynaptic membrane + + + + + + + + diff --git a/ro.obo b/ro.obo index 507cc173..a1a1b5c9 100644 --- a/ro.obo +++ b/ro.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: releases/2017-03-23 +data-version: releases/2017-04-11 subsetdef: ro-eco "" subsetdef: RO:0002259 "" remark: Includes Ontology(OntologyID(Anonymous-21)) [Axioms: 26 Logical Axioms: 0] @@ -10,6 +10,7 @@ remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 276 Logical Axioms: 56] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 6 Logical Axioms: 2] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 42 Logical Axioms: 16] +remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 49 Logical Axioms: 14] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 29 Logical Axioms: 9] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 20 Logical Axioms: 6] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 731 Logical Axioms: 148] @@ -4096,7 +4097,6 @@ name: results in movement of def: "Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c" [] property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000232 "" xsd:string -domain: GO:0040011 is_a: RO:0000057 ! has participant [Typedef] diff --git a/ro.owl b/ro.owl index ca201dbe..ce15b163 100644 --- a/ro.owl +++ b/ro.owl @@ -15,10 +15,11 @@ xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"> - + + @@ -6098,7 +6099,6 @@ the a supports either the existence of b, or the truth value of b. - Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c Chris Mungall @@ -7207,35 +7207,6 @@ Environments include natural environments or exposures, experimentally applied c - - - - - - nucleus - - - - - - - - - biological_process - - - - - - - - - - membrane - - - - @@ -7249,63 +7220,12 @@ Environments include natural environments or exposures, experimentally applied c - - - - - - axon - - - - - - - - - - dendrite - - - - - - - - - - - presynaptic membrane - - - - - - - - - - cell projection - - - - - - - - - - neuron projection - - - - @@ -7319,47 +7239,6 @@ Environments include natural environments or exposures, experimentally applied c - - - - - - synapse part - - - - - - - - - - cell part - - - - - - - - - - synapse - - - - - - - - - - - postsynaptic membrane - - - - diff --git a/src/ontology/Makefile b/src/ontology/Makefile index 1f079bcc..6f7db3a9 100644 --- a/src/ontology/Makefile +++ b/src/ontology/Makefile @@ -1,6 +1,6 @@ OBO=http://purl.obolibrary.org/obo -ONTS= ro.obo ro.owl ro.json annotations.owl core.owl go-biotic.owl pato_import.owl temporal-intervals.owl bfo-axioms.owl bfo-classes-minimal.owl el-constraints.owl go_mf_import.owl rohom.owl +ONTS= ro.obo ro.owl ro.json annotations.owl core.owl go-biotic.owl pato_import.owl temporal-intervals.owl bfo-axioms.owl bfo-classes-minimal.owl el-constraints.owl go_mf_import.owl go_cc_import.owl rohom.owl # ======================================== # PRODUCTION diff --git a/src/ontology/ro.obo b/src/ontology/ro.obo index 507cc173..a1a1b5c9 100644 --- a/src/ontology/ro.obo +++ b/src/ontology/ro.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: releases/2017-03-23 +data-version: releases/2017-04-11 subsetdef: ro-eco "" subsetdef: RO:0002259 "" remark: Includes Ontology(OntologyID(Anonymous-21)) [Axioms: 26 Logical Axioms: 0] @@ -10,6 +10,7 @@ remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 276 Logical Axioms: 56] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 6 Logical Axioms: 2] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 42 Logical Axioms: 16] +remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 49 Logical Axioms: 14] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 29 Logical Axioms: 9] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 20 Logical Axioms: 6] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 731 Logical Axioms: 148] @@ -4096,7 +4097,6 @@ name: results in movement of def: "Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c" [] property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000232 "" xsd:string -domain: GO:0040011 is_a: RO:0000057 ! has participant [Typedef] diff --git a/src/ontology/ro.owl b/src/ontology/ro.owl index ca201dbe..ce15b163 100644 --- a/src/ontology/ro.owl +++ b/src/ontology/ro.owl @@ -15,10 +15,11 @@ xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"> - + + @@ -6098,7 +6099,6 @@ the a supports either the existence of b, or the truth value of b. - Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c Chris Mungall @@ -7207,35 +7207,6 @@ Environments include natural environments or exposures, experimentally applied c - - - - - - nucleus - - - - - - - - - biological_process - - - - - - - - - - membrane - - - - @@ -7249,63 +7220,12 @@ Environments include natural environments or exposures, experimentally applied c - - - - - - axon - - - - - - - - - - dendrite - - - - - - - - - - - presynaptic membrane - - - - - - - - - - cell projection - - - - - - - - - - neuron projection - - - - @@ -7319,47 +7239,6 @@ Environments include natural environments or exposures, experimentally applied c - - - - - - synapse part - - - - - - - - - - cell part - - - - - - - - - - synapse - - - - - - - - - - - postsynaptic membrane - - - - diff --git a/src/ontology/subsets/ro-causal.obo b/src/ontology/subsets/ro-causal.obo index 29c72ec2..154cd430 100644 --- a/src/ontology/subsets/ro-causal.obo +++ b/src/ontology/subsets/ro-causal.obo @@ -2854,7 +2854,6 @@ def: "Holds between p and c when p is locomotion process and the outcome of this xref: RO:0002565 property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000232 "" xsd:string -domain: GO:0040011 is_a: has_participant [Typedef] diff --git a/src/ontology/subsets/ro-causal.owl b/src/ontology/subsets/ro-causal.owl index 75c7e881..058cd2cd 100644 --- a/src/ontology/subsets/ro-causal.owl +++ b/src/ontology/subsets/ro-causal.owl @@ -4280,7 +4280,6 @@ Each of these 3 primitives can be composed to yield a cross-product of different - Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c Chris Mungall @@ -5303,12 +5302,6 @@ Environments include natural environments or exposures, experimentally applied c - - - - - - diff --git a/src/ontology/subsets/ro-chado.obo b/src/ontology/subsets/ro-chado.obo index d337776c..05629225 100644 --- a/src/ontology/subsets/ro-chado.obo +++ b/src/ontology/subsets/ro-chado.obo @@ -9,6 +9,7 @@ remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 276 Logical Axioms: 56] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 6 Logical Axioms: 2] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 42 Logical Axioms: 16] +remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 49 Logical Axioms: 14] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 29 Logical Axioms: 9] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 20 Logical Axioms: 6] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 731 Logical Axioms: 148] diff --git a/src/ontology/subsets/ro-developmental.obo b/src/ontology/subsets/ro-developmental.obo index 1625c077..ab6a2357 100644 --- a/src/ontology/subsets/ro-developmental.obo +++ b/src/ontology/subsets/ro-developmental.obo @@ -2854,7 +2854,6 @@ def: "Holds between p and c when p is locomotion process and the outcome of this xref: RO:0002565 property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000232 "" xsd:string -domain: GO:0040011 is_a: has_participant [Typedef] diff --git a/src/ontology/subsets/ro-developmental.owl b/src/ontology/subsets/ro-developmental.owl index e443d05a..61b1d295 100644 --- a/src/ontology/subsets/ro-developmental.owl +++ b/src/ontology/subsets/ro-developmental.owl @@ -4280,7 +4280,6 @@ Each of these 3 primitives can be composed to yield a cross-product of different - Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c Chris Mungall @@ -5303,12 +5302,6 @@ Environments include natural environments or exposures, experimentally applied c - - - - - - diff --git a/src/ontology/subsets/ro-interaction.obo b/src/ontology/subsets/ro-interaction.obo index 83194ef5..0a873f2b 100644 --- a/src/ontology/subsets/ro-interaction.obo +++ b/src/ontology/subsets/ro-interaction.obo @@ -2854,7 +2854,6 @@ def: "Holds between p and c when p is locomotion process and the outcome of this xref: RO:0002565 property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000232 "" xsd:string -domain: GO:0040011 is_a: has_participant [Typedef] diff --git a/src/ontology/subsets/ro-interaction.owl b/src/ontology/subsets/ro-interaction.owl index b80c0d7e..cdca2040 100644 --- a/src/ontology/subsets/ro-interaction.owl +++ b/src/ontology/subsets/ro-interaction.owl @@ -4280,7 +4280,6 @@ Each of these 3 primitives can be composed to yield a cross-product of different - Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c Chris Mungall @@ -5303,12 +5302,6 @@ Environments include natural environments or exposures, experimentally applied c - - - - - - diff --git a/src/ontology/subsets/ro-mereotopology.obo b/src/ontology/subsets/ro-mereotopology.obo index 6b7aca24..43ad3a04 100644 --- a/src/ontology/subsets/ro-mereotopology.obo +++ b/src/ontology/subsets/ro-mereotopology.obo @@ -2854,7 +2854,6 @@ def: "Holds between p and c when p is locomotion process and the outcome of this xref: RO:0002565 property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000232 "" xsd:string -domain: GO:0040011 is_a: has_participant [Typedef] diff --git a/src/ontology/subsets/ro-mereotopology.owl b/src/ontology/subsets/ro-mereotopology.owl index 969f09e3..6d5acf7d 100644 --- a/src/ontology/subsets/ro-mereotopology.owl +++ b/src/ontology/subsets/ro-mereotopology.owl @@ -4280,7 +4280,6 @@ Each of these 3 primitives can be composed to yield a cross-product of different - Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c Chris Mungall @@ -5303,12 +5302,6 @@ Environments include natural environments or exposures, experimentally applied c - - - - - - diff --git a/src/ontology/subsets/ro-sequence.obo b/src/ontology/subsets/ro-sequence.obo index 7db4ab76..310b95c0 100644 --- a/src/ontology/subsets/ro-sequence.obo +++ b/src/ontology/subsets/ro-sequence.obo @@ -2854,7 +2854,6 @@ def: "Holds between p and c when p is locomotion process and the outcome of this xref: RO:0002565 property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000232 "" xsd:string -domain: GO:0040011 is_a: has_participant [Typedef] diff --git a/src/ontology/subsets/ro-sequence.owl b/src/ontology/subsets/ro-sequence.owl index 54d83702..24413b5d 100644 --- a/src/ontology/subsets/ro-sequence.owl +++ b/src/ontology/subsets/ro-sequence.owl @@ -4280,7 +4280,6 @@ Each of these 3 primitives can be composed to yield a cross-product of different - Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c Chris Mungall @@ -5303,12 +5302,6 @@ Environments include natural environments or exposures, experimentally applied c - - - - - - diff --git a/src/ontology/subsets/ro-time-interval.obo b/src/ontology/subsets/ro-time-interval.obo index 6170ec3f..3a21abdd 100644 --- a/src/ontology/subsets/ro-time-interval.obo +++ b/src/ontology/subsets/ro-time-interval.obo @@ -2854,7 +2854,6 @@ def: "Holds between p and c when p is locomotion process and the outcome of this xref: RO:0002565 property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000232 "" xsd:string -domain: GO:0040011 is_a: has_participant [Typedef] diff --git a/src/ontology/subsets/ro-time-interval.owl b/src/ontology/subsets/ro-time-interval.owl index d01bcfb1..d218307e 100644 --- a/src/ontology/subsets/ro-time-interval.owl +++ b/src/ontology/subsets/ro-time-interval.owl @@ -4280,7 +4280,6 @@ Each of these 3 primitives can be composed to yield a cross-product of different - Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c Chris Mungall @@ -5303,12 +5302,6 @@ Environments include natural environments or exposures, experimentally applied c - - - - - - diff --git a/subsets/ro-causal.obo b/subsets/ro-causal.obo index 29c72ec2..154cd430 100644 --- a/subsets/ro-causal.obo +++ b/subsets/ro-causal.obo @@ -2854,7 +2854,6 @@ def: "Holds between p and c when p is locomotion process and the outcome of this xref: RO:0002565 property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000232 "" xsd:string -domain: GO:0040011 is_a: has_participant [Typedef] diff --git a/subsets/ro-causal.owl b/subsets/ro-causal.owl index 75c7e881..058cd2cd 100644 --- a/subsets/ro-causal.owl +++ b/subsets/ro-causal.owl @@ -4280,7 +4280,6 @@ Each of these 3 primitives can be composed to yield a cross-product of different - Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c Chris Mungall @@ -5303,12 +5302,6 @@ Environments include natural environments or exposures, experimentally applied c - - - - - - diff --git a/subsets/ro-chado.obo b/subsets/ro-chado.obo index d337776c..05629225 100644 --- a/subsets/ro-chado.obo +++ b/subsets/ro-chado.obo @@ -9,6 +9,7 @@ remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 276 Logical Axioms: 56] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 6 Logical Axioms: 2] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 42 Logical Axioms: 16] +remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 49 Logical Axioms: 14] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 29 Logical Axioms: 9] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 20 Logical Axioms: 6] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 731 Logical Axioms: 148] diff --git a/subsets/ro-developmental.obo b/subsets/ro-developmental.obo index 1625c077..ab6a2357 100644 --- a/subsets/ro-developmental.obo +++ b/subsets/ro-developmental.obo @@ -2854,7 +2854,6 @@ def: "Holds between p and c when p is locomotion process and the outcome of this xref: RO:0002565 property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000232 "" xsd:string -domain: GO:0040011 is_a: has_participant [Typedef] diff --git a/subsets/ro-developmental.owl b/subsets/ro-developmental.owl index e443d05a..61b1d295 100644 --- a/subsets/ro-developmental.owl +++ b/subsets/ro-developmental.owl @@ -4280,7 +4280,6 @@ Each of these 3 primitives can be composed to yield a cross-product of different - Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c Chris Mungall @@ -5303,12 +5302,6 @@ Environments include natural environments or exposures, experimentally applied c - - - - - - diff --git a/subsets/ro-interaction.obo b/subsets/ro-interaction.obo index 83194ef5..0a873f2b 100644 --- a/subsets/ro-interaction.obo +++ b/subsets/ro-interaction.obo @@ -2854,7 +2854,6 @@ def: "Holds between p and c when p is locomotion process and the outcome of this xref: RO:0002565 property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000232 "" xsd:string -domain: GO:0040011 is_a: has_participant [Typedef] diff --git a/subsets/ro-interaction.owl b/subsets/ro-interaction.owl index b80c0d7e..cdca2040 100644 --- a/subsets/ro-interaction.owl +++ b/subsets/ro-interaction.owl @@ -4280,7 +4280,6 @@ Each of these 3 primitives can be composed to yield a cross-product of different - Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c Chris Mungall @@ -5303,12 +5302,6 @@ Environments include natural environments or exposures, experimentally applied c - - - - - - diff --git a/subsets/ro-mereotopology.obo b/subsets/ro-mereotopology.obo index 6b7aca24..43ad3a04 100644 --- a/subsets/ro-mereotopology.obo +++ b/subsets/ro-mereotopology.obo @@ -2854,7 +2854,6 @@ def: "Holds between p and c when p is locomotion process and the outcome of this xref: RO:0002565 property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000232 "" xsd:string -domain: GO:0040011 is_a: has_participant [Typedef] diff --git a/subsets/ro-mereotopology.owl b/subsets/ro-mereotopology.owl index 969f09e3..6d5acf7d 100644 --- a/subsets/ro-mereotopology.owl +++ b/subsets/ro-mereotopology.owl @@ -4280,7 +4280,6 @@ Each of these 3 primitives can be composed to yield a cross-product of different - Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c Chris Mungall @@ -5303,12 +5302,6 @@ Environments include natural environments or exposures, experimentally applied c - - - - - - diff --git a/subsets/ro-sequence.obo b/subsets/ro-sequence.obo index 7db4ab76..310b95c0 100644 --- a/subsets/ro-sequence.obo +++ b/subsets/ro-sequence.obo @@ -2854,7 +2854,6 @@ def: "Holds between p and c when p is locomotion process and the outcome of this xref: RO:0002565 property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000232 "" xsd:string -domain: GO:0040011 is_a: has_participant [Typedef] diff --git a/subsets/ro-sequence.owl b/subsets/ro-sequence.owl index 54d83702..24413b5d 100644 --- a/subsets/ro-sequence.owl +++ b/subsets/ro-sequence.owl @@ -4280,7 +4280,6 @@ Each of these 3 primitives can be composed to yield a cross-product of different - Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c Chris Mungall @@ -5303,12 +5302,6 @@ Environments include natural environments or exposures, experimentally applied c - - - - - - diff --git a/subsets/ro-time-interval.obo b/subsets/ro-time-interval.obo index 6170ec3f..3a21abdd 100644 --- a/subsets/ro-time-interval.obo +++ b/subsets/ro-time-interval.obo @@ -2854,7 +2854,6 @@ def: "Holds between p and c when p is locomotion process and the outcome of this xref: RO:0002565 property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000232 "" xsd:string -domain: GO:0040011 is_a: has_participant [Typedef] diff --git a/subsets/ro-time-interval.owl b/subsets/ro-time-interval.owl index d01bcfb1..d218307e 100644 --- a/subsets/ro-time-interval.owl +++ b/subsets/ro-time-interval.owl @@ -4280,7 +4280,6 @@ Each of these 3 primitives can be composed to yield a cross-product of different - Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c Chris Mungall @@ -5303,12 +5302,6 @@ Environments include natural environments or exposures, experimentally applied c - - - - - -