From 2a9b51592238a4c37f58944e7187eb7aabeefc08 Mon Sep 17 00:00:00 2001
From: Nico Matentzoglu <nicolas.matentzoglu@gmail.com>
Date: Tue, 5 Apr 2022 15:22:33 +0300
Subject: [PATCH] Merging in develops from chain is component

see https://github.com/obophenotype/uberon/issues/2381
---
 src/ontology/components/develops-from-chains.owl | 13 +++++++++++++
 src/ontology/uberon.Makefile                     |  6 +++++-
 2 files changed, 18 insertions(+), 1 deletion(-)
 create mode 100644 src/ontology/components/develops-from-chains.owl

diff --git a/src/ontology/components/develops-from-chains.owl b/src/ontology/components/develops-from-chains.owl
new file mode 100644
index 0000000000..10891b3159
--- /dev/null
+++ b/src/ontology/components/develops-from-chains.owl
@@ -0,0 +1,13 @@
+Prefix(:=<http://purl.obolibrary.org/obo/uberon/core.owl#>)
+Prefix(owl:=<http://www.w3.org/2002/07/owl#>)
+Prefix(rdf:=<http://www.w3.org/1999/02/22-rdf-syntax-ns#>)
+Prefix(xml:=<http://www.w3.org/XML/1998/namespace>)
+Prefix(xsd:=<http://www.w3.org/2001/XMLSchema#>)
+Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
+
+
+Ontology(<http://purl.obolibrary.org/obo/uberon/components/develops-from-chains.owl>
+
+SubObjectPropertyOf(ObjectPropertyChain(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/RO_0002202>) <http://purl.obolibrary.org/obo/RO_0002202>)
+
+)
\ No newline at end of file
diff --git a/src/ontology/uberon.Makefile b/src/ontology/uberon.Makefile
index 5a4b97ee7e..100ce1ee77 100644
--- a/src/ontology/uberon.Makefile
+++ b/src/ontology/uberon.Makefile
@@ -176,12 +176,16 @@ $(TMPDIR)/is_ok: $(TMPDIR)/materialized.owl
 ## **Hacking_Feb_2022** TODO - rewrite as as expansions from annotation axioms using SPARQL. Expanded axioms --> component (as for taxon restrictions).
 
 TMP_REFL=$(COMPONENTSDIR)/reflexivity_axioms.owl
+DEVELOPS_FROM_CHAIN=$(COMPONENTSDIR)/develops-from-chains.owl
+# see https://github.com/obophenotype/uberon/issues/2381
+
 $(TMPDIR)/materialized.owl: $(TMPDIR)/unreasoned.owl $(TMP_REFL)
-	$(ROBOT) merge -i $< --collapse-import-closure false \
+	$(ROBOT) merge -i $< -i $(DEVELOPS_FROM_CHAIN) --collapse-import-closure false \
 		relax \
 		materialize -T $(CONFIGDIR)/basic_properties.txt -r elk \
 		reason -r elk --exclude-duplicate-axioms true --equivalent-classes-allowed asserted-only \
 		unmerge -i $(TMP_REFL) \
+		unmerge -i $(DEVELOPS_FROM_CHAIN) \
 		annotate -O $(URIBASE)/uberon/materialized.owl -V  $(RELEASE)/materialized.owl -o $@ 2>&1 > $@.LOG
 .PRECIOUS: $(TMPDIR)/materialized.owl