diff --git a/src/content/docs/guides/arc-cwl-wrap-script.mdx b/src/content/docs/guides/arc-cwl-wrap-script.mdx index 77316b0ae..ede58e51e 100644 --- a/src/content/docs/guides/arc-cwl-wrap-script.mdx +++ b/src/content/docs/guides/arc-cwl-wrap-script.mdx @@ -109,6 +109,19 @@ FigureFileName: heatmap + +Briefly summarized, + +- the `heatmap.py` is the example data analysis script, which creates a heatmap based on a CSV table input +- the `workflow.cwl` is a CWL document binds the `heatmap.py` + - It requires two `inputs` + 1. `MeasurementTableCSV`: the file name of the CSV table + 2. `FigureFileName`: how the user wants to name the output file + - And it generates one `output`: an `.svg` file named according to `FigureFileName` +- the `job.yml` provides the required `input` parameters for `workflow.cwl` + - the relative path to the CSV table input: `sugar_result.csv` + - the desired file name: `heatmap` + ```mermaid @@ -123,18 +136,6 @@ sugar_result.csv -.- job.yml --o workflow.cwl--> heatmap.svg -Briefly summarized, - -- the `heatmap.py` is the example data analysis script, which creates a heatmap based on a CSV table input -- the `workflow.cwl` is a CWL document binds the `heatmap.py` - - It requires two `inputs` - 1. `MeasurementTableCSV`: the file name of the CSV table - 2. `FigureFileName`: how the user wants to name the output file - - And it generates one `output`: an `.svg` file named according to `FigureFileName` -- the `job.yml` provides the required `input` parameters for `workflow.cwl` - - the relative path to the CSV table input: `sugar_result.csv` - - the desired file name: `heatmap` - ## Using the workflow in your ARC