Adjust psortb parser

[FranceCosta]

Control that the psortb parser reposrts the correct predictio. Unknown should be outputed for values <~ 7.5

[Ayman344]

May I know what is the psortb database that we are extracting the output from? Is it https://www.psort.org/psortb/?
I mean if I run a fasta file consisting for protien sequence as an input in the web psort.org and run the same fasta file converting into a sequence database i.e. creating a database of protein sequences that mimics a proteome so that it can be used with NERVE. Won't I get the same result?

[francescopatane96]

May I know what is the psortb database that we are extracting the output from? Is it https://www.psort.org/psortb/? I mean if I run a fasta file consisting for protien sequence as an input in the web psort.org and run the same fasta file converting into a sequence database i.e. creating a database of protein sequences that mimics a proteome so that it can be used with NERVE. Won't I get the same result?

yes, you should get the identical result

[FranceCosta]

Well, more or less. We parse the output to simplify it. We report only the localization with the highest score, provided it is above 3. For proteins with scores below this treshold, we just report "Unknown" as localization. Note that the localization is considered by the select module only for scores above 7.5.