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as-server-process.md

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As an NDEx Server Process

java -jar <classpath>morphcx.jar -S

In the above, the -S (must use a CAPITAL LETTER!) forces stdin as the input stream and stdout as the output stream.

In the above example, the application default produces a tab-separated value output stream. This can also be explicitly done by adding the -c tsv (lower case!) parameter option.

The next command example will produce the exact same .tsv file output:

java -jar <classpath>morphcx.jar -S -c tsv

where the -c (use lower case!) parameter option designates a tsv output stream is wanted.

When a comma-separated value output stream is desired, use the following instead:

java -jar <classpath>morphcx.jar -S -c csv 

Similarly, this next command will produce an Excel .xlsx file:

java -jar <classpath>morphcx.jar -S -c excel 

The parameter options can be specified in any order.