Table 1. Popular collections of bioinformatics resources. Accessed on 2018-11-30
General bioinformatics collections
| Name | Description | URL | Stars | Watchers | Forks |
|---|---|---|---|---|---|
| deeplearning-biology | A list of deep learning implementations in biology | https://github.com/hussius/deeplearning-biology | 775 | 148 | 198 |
| deep-review | A collaboratively written review paper on deep learning genomics and precision medicine | https://github.com/greenelab/deep-review | 742 | 120 | 188 |
| Awesome-Bioinformatics | A curated list of awesome Bioinformatics libraries and software | https://github.com/danielecook/Awesome-Bioinformatics | 583 | 80 | 158 |
| awesome | Awesome resources on Bioinformatics data science machine learning programming language Python Golang R Perl and miscellaneous stuff | https://github.com/shenwei356/awesome | 304 | 21 | 115 |
| genomicspapers | The Leek group guide to genomics papers | https://github.com/jtleek/genomicspapers | 299 | 54 | 134 |
| biotools | A list of useful bioinformatics resources | https://github.com/jdidion/biotools | 205 | 24 | 60 |
| getting-started-with-genomics-tools-and-resources | Unix R and python tools for genomics | https://github.com/crazyhottommy/getting-started-with-genomics-tools-and-resources | 157 | 27 | 69 |
Field-specific bioinformatics collections
| Name | Description | URL | Stars | Watchers | Forks |
|---|---|---|---|---|---|
| awesome-single-cell | List of software packages for single-cell data analysis including RNA-seq ATAC-seq etc | https://github.com/seandavi/awesome-single-cell | 712 | 154 | 303 |
| RNA-seq-analysis | RNAseq analysis notes from Ming Tang | https://github.com/crazyhottommy/RNA-seq-analysis | 260 | 44 | 104 |
| ChIP-seq-analysis | ChIP-seq analysis notes from Ming Tang | https://github.com/crazyhottommy/ChIP-seq-analysis | 252 | 41 | 136 |
| awesome-cancer-variant-databases | A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants | https://github.com/seandavi/awesome-cancer-variant-databases | 109 | 23 | 25 |
| awesome-10x-genomics | List of tools and resources related to the 10x Genomics GEMCode/Chromium system | https://github.com/johandahlberg/awesome-10x-genomics | 63 | 8 | 12 |
| DNA-seq-analysis | DNA sequencing analysis notes from Ming Tang | https://github.com/crazyhottommy/DNA-seq-analysis | 53 | 7 | 34 |
| awesome-microbes | List of computational resources for analyzing microbial sequencing data | https://github.com/stevetsa/awesome-microbes | 33 | 5 | 16 |
| DNA-methylation-analysis | DNA methylation analysis notes from Ming Tang | https://github.com/crazyhottommy/DNA-methylation-analysis | 25 | 4 | 22 |