From 0b88d253e0b9f0fe6c74d0ed0867f010c2c160fc Mon Sep 17 00:00:00 2001 From: Michael Creel Date: Wed, 6 Mar 2024 12:34:44 +0100 Subject: [PATCH] deps --- Manifest.toml | 102 ++++++++++++++++++++++++++------------------------ 1 file changed, 53 insertions(+), 49 deletions(-) diff --git a/Manifest.toml b/Manifest.toml index 1d98c71..e1ebc84 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -43,16 +43,17 @@ uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.5" [[deps.Accessors]] -deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] -git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.35" +version = "0.1.36" [deps.Accessors.extensions] AccessorsAxisKeysExt = "AxisKeys" AccessorsIntervalSetsExt = "IntervalSets" AccessorsStaticArraysExt = "StaticArrays" AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" [deps.Accessors.weakdeps] AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" @@ -60,12 +61,13 @@ version = "0.1.35" Requires = "ae029012-a4dd-5104-9daa-d747884805df" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" +git-tree-sha1 = "e2a9873379849ce2ac9f9fa34b0e37bde5d5fe0a" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.0.1" +version = "4.0.2" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -144,15 +146,16 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" +git-tree-sha1 = "881e43f1aa014a6f75c8fc0847860e00a1500846" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.7.1" +version = "7.8.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -161,6 +164,7 @@ version = "7.7.1" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" @@ -274,9 +278,9 @@ version = "1.0.1+0" [[deps.CSV]] deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "679e69c611fff422038e9e21e270c4197d49d918" +git-tree-sha1 = "a44910ceb69b0d44fe262dd451ab11ead3ed0be8" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.12" +version = "0.10.13" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -303,9 +307,9 @@ version = "1.63.0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "aef70bb349b20aa81a82a19704c3ef339d4ee494" +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.22.1" +version = "1.23.0" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -470,16 +474,16 @@ uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" version = "1.6.1" [[deps.DataFramesMeta]] -deps = ["Chain", "DataFrames", "MacroTools", "OrderedCollections", "Reexport"] -git-tree-sha1 = "6970958074cd09727b9200685b8631b034c0eb16" +deps = ["Chain", "DataFrames", "MacroTools", "OrderedCollections", "Reexport", "TableMetadataTools"] +git-tree-sha1 = "e3932524132a3fb215385f5bd7d7e8b2c7ead737" uuid = "1313f7d8-7da2-5740-9ea0-a2ca25f37964" -version = "0.14.1" +version = "0.15.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" +git-tree-sha1 = "0f4b5d62a88d8f59003e43c25a8a90de9eb76317" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.17" +version = "0.18.18" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -589,9 +593,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] -git-tree-sha1 = "60a3a231813a89bd796a639d5ce389386e89f4e3" +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.24.7" +version = "0.24.9" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -794,12 +798,6 @@ git-tree-sha1 = "f3cf88025f6d03c194d73f5d13fee9004a108329" uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" version = "1.3.6" -[[deps.Formatting]] -deps = ["Logging", "Printf"] -git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.3" - [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" @@ -1183,9 +1181,9 @@ version = "0.2.4" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" +git-tree-sha1 = "ed7167240f40e62d97c1f5f7735dea6de3cc5c49" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.17" +version = "0.9.18" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -1256,10 +1254,10 @@ uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" version = "1.3.1" [[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" +deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "cad560042a7cc108f5a4c24ea1431a9221f22c1b" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" +version = "0.16.2" [deps.Latexify.extensions] DataFramesExt = "DataFrames" @@ -1360,10 +1358,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LightXML]] deps = ["Libdl", "XML2_jll"] @@ -1441,10 +1439,10 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "d0ce57aa5ebbdb456bac3bc5a2ca15cd06ec5f1b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.5" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] @@ -1504,9 +1502,9 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MathOptInterface]] deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"] -git-tree-sha1 = "e8b98c868029d007102dc5f98986c81f33b0ec37" +git-tree-sha1 = "679c1aec6934d322783bd15db4d18f898653be4f" uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" -version = "1.26.0" +version = "1.27.0" [[deps.MathTeXEngine]] deps = ["AbstractTrees", "Automa", "DataStructures", "FreeTypeAbstraction", "GeometryBasics", "LaTeXStrings", "REPL", "RelocatableFolders", "UnicodeFun"] @@ -1862,9 +1860,9 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" +git-tree-sha1 = "7b1a9df27f072ac4c9c7cbe5efb198489258d1f5" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.4.0" +version = "1.4.1" [[deps.Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] @@ -1924,9 +1922,9 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.3" [[deps.PrettyPrint]] git-tree-sha1 = "632eb4abab3449ab30c5e1afaa874f0b98b586e4" @@ -1961,9 +1959,9 @@ version = "0.1.4" [[deps.ProgressMeter]] deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" +version = "1.10.0" [[deps.QOI]] deps = ["ColorTypes", "FileIO", "FixedPointNumbers"] @@ -2430,6 +2428,12 @@ deps = ["Dates"] uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" version = "1.0.3" +[[deps.TableMetadataTools]] +deps = ["DataAPI", "Dates", "TOML", "Tables", "Unitful"] +git-tree-sha1 = "c0405d3f8189bb9a9755e429c6ea2138fca7e31f" +uuid = "9ce81f87-eacc-4366-bf80-b621a3098ee2" +version = "0.1.0" + [[deps.TableOperations]] deps = ["SentinelArrays", "Tables", "Test"] git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" @@ -2501,18 +2505,18 @@ version = "0.24.1" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" +git-tree-sha1 = "d1b5943c696540f124079155265eb752fe4816a1" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.31" +version = "0.2.32" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" +git-tree-sha1 = "3caa21522e7efac1ba21834a03734c57b4611c7e" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.10.3" +version = "0.10.4" weakdeps = ["Random", "Test"] [deps.TranscodingStreams.extensions] @@ -2917,9 +2921,9 @@ version = "1.18.0+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "873b4f805771d3e4bafe63af759a26ea8ca84d14" +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.42+0" +version = "1.6.43+0" [[deps.libsixel_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Pkg", "libpng_jll"]