3DSlicer INSTRUCTIONS.txt

SMART NEEDLE MODULE

1) Slicer Version:

Mac: worked with Slicer 5.3
Ubuntu: worked with Slicer 5.3 and 5.4

2) Modules required:

* Installed from extension manager:
OpenIGTLink
ZFrameRegistration (with module modification, see (3) bellow)
SlicerDevelopmentModule

* Installed from repositories:
CurveMaker: https://github.com/tokjun/CurveMaker.git
SmartNeedle: https://github.com/maribernardes/SmartNeedle-3DSlicer.git  (TODO: Change to SmartNeedle repository)

3) ZFrameRegistration modification:
Replace 'ZFrameRegistrationWithROI.py' and the 'Resources/zFrame' folder with versions from personal repository: 
https://github.com/maribernardes/ZFrameRegistration-3DSlicer.git

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AI NEEDLE TRACKING MODULE

1) Slicer Version:

Mac: worked with Slicer 5.3
Ubuntu: worked with Slicer 5.3
MONAI version: TODO
Torch vertion: TODO

2) Modules required:
* Installed from extension manager:
OpenIGTLink
ZFrameRegistration (with module modification, see (3) bellow)
Pytorch Utils

* Installed from repositories:
AI Needle Tracking: https://github.com/maribernardes/AINeedleTracking-3DSlicer
Tracker Stabilizer: https://github.com/maribernardes/Slicer-TrackerStabilizer-3DSlicer (TODO: Change to https://github.com/lchauvin/Slicer-TrackerStabilizer when they updated Qt5 modifications)

* Pip install inside 3D Slicer Python Interactor:
slicer.util.pip_install('monai')

3) ZFrameRegistration modification:
Same as for SmartNeedle module