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Extract conditional model results of the given target #26

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dariushghasemi opened this issue Oct 31, 2024 · 0 comments
Open

Extract conditional model results of the given target #26

dariushghasemi opened this issue Oct 31, 2024 · 0 comments

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@dariushghasemi
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Once a target was given from MVP, we must extract results of the conditional model from RDS file saved by COJO pipeline. To do so, there are a few required inputs which might be modified later based on what we will receive later.

  1. identifier of protein sequence
  2. identifier of target SNP

First, we must follow some steps:

  • specify path to the final(?) COJO analysis results
  • read final(?) merged locus breaker results
  • find locus name through matching seqid and SNPID
  • find the correct path to conditional data of the matched locus
  • read the conditional data
  • access conditional data by target SNP identifier
  • save conditional data file in CSV format
dariushghasemi added a commit that referenced this issue Oct 31, 2024
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