diff --git a/Code/redblood/Mesh.cc b/Code/redblood/Mesh.cc index cb9e6462a..54c335fd0 100644 --- a/Code/redblood/Mesh.cc +++ b/Code/redblood/Mesh.cc @@ -62,7 +62,7 @@ namespace hemelb return result; } - std::shared_ptr readMesh(std::istream &stream) + std::shared_ptr readMesh(std::istream &stream, bool fixFacetOrientation) { log::Logger::Log("Reading red blood cell from stream"); @@ -132,7 +132,10 @@ namespace hemelb num_vertices, num_facets); - orientFacets(*result); + if (fixFacetOrientation) + { + orientFacets(*result); + } return result; } @@ -704,6 +707,7 @@ namespace hemelb std::swap(facet[0], facet[2]); } } + } } } // hemelb::redblood diff --git a/Code/redblood/Mesh.h b/Code/redblood/Mesh.h index 0e72dd605..1d87aecdf 100644 --- a/Code/redblood/Mesh.h +++ b/Code/redblood/Mesh.h @@ -235,7 +235,7 @@ namespace hemelb std::shared_ptr readMesh(std::string const &filename, util::UnitConverter const &); //! Read mesh from file //! Format is from T. Krueger's thesis - std::shared_ptr readMesh(std::istream &stream); + std::shared_ptr readMesh(std::istream &stream, bool fixFacetOrientation=true); std::shared_ptr readMesh(std::istream &stream, util::UnitConverter const &); //! Write mesh from file //! Format is from T. Krueger's thesis diff --git a/Code/unittests/CMakeLists.txt b/Code/unittests/CMakeLists.txt index e0f40b3f4..b5bb29ba1 100644 --- a/Code/unittests/CMakeLists.txt +++ b/Code/unittests/CMakeLists.txt @@ -86,4 +86,7 @@ add_to_resources(resources/four_cube.gmy resources/four_cube.xml resources/cyl_l100_r5.xml resources/cyl_l100_r5.gmy resources/rbc_ico_2880.msh + resources/rbc_ico_720_correct.msh + resources/rbc_ico_720.msh + resources/992Particles_rank3_26_t992.msh ) diff --git a/Code/unittests/redblood.h b/Code/unittests/redblood.h index 69d6d99fa..73cec1853 100644 --- a/Code/unittests/redblood.h +++ b/Code/unittests/redblood.h @@ -70,5 +70,6 @@ namespace hemelb #include "unittests/redblood/WallCellPairIteratorTests.h" #include "unittests/redblood/NodeIntegrationTests.h" #include +#include "unittests/redblood/LoadingTimmMeshTests.h" #undef HEMELB_DOING_UNITTESTS #endif diff --git a/Code/unittests/redblood/LoadingTimmMeshTests.h b/Code/unittests/redblood/LoadingTimmMeshTests.h new file mode 100644 index 000000000..1521121fe --- /dev/null +++ b/Code/unittests/redblood/LoadingTimmMeshTests.h @@ -0,0 +1,93 @@ +// +// Copyright (C) University College London, 2007-2012, all rights reserved. +// +// This file is part of HemeLB and is CONFIDENTIAL. You may not work +// with, install, use, duplicate, modify, redistribute or share this +// file, or any part thereof, other than as allowed by any agreement +// specifically made by you with University College London. +// + +#ifndef HEMELB_UNITTESTS_TIMM_MESH_H +#define HEMELB_UNITTESTS_TIMM_MESH_H + +#include +#include +#include "resources/Resource.h" +#include "redblood/Mesh.h" +#include "unittests/redblood/Fixtures.h" + +namespace hemelb +{ + namespace unittests + { + namespace redblood + { + // Tests we can load .msh files output by Timm's code + class LoadingTimmMeshTests : public BasisFixture + { + CPPUNIT_TEST_SUITE (LoadingTimmMeshTests); + CPPUNIT_TEST (testWrongIcoFile); + CPPUNIT_TEST (testCorrectedIcoFile); + CPPUNIT_TEST (testSimulationOutputFile); + CPPUNIT_TEST_SUITE_END(); + + public: + void setUp() + { + } + + bool checkMeshOrientation(MeshData const &mesh) + { + MeshData copy(mesh); + orientFacets(copy); + for (size_t i(0); i < mesh.facets.size(); ++i) + { + if (mesh.facets[i] != copy.facets[i]) + { + return false; + } + } + return true; + } + + std::shared_ptr readMeshFromFileNoFix(const std::string filename) + { + auto fullPath = resources::Resource(filename).Path(); + CPPUNIT_ASSERT(util::file_exists(fullPath.c_str())); + + std::ifstream file; + file.open(fullPath); + + return readMesh(file, false); + } + + void testWrongIcoFile() + { + // This is one of Timm's original ico files and has a face with the wrong vertex orientation leading to an inward pointing normal + // Loading it without fixing face orientation should lead to inconsistent orientation + auto mesh = readMeshFromFileNoFix("rbc_ico_720.msh"); + CPPUNIT_ASSERT(!checkMeshOrientation(*mesh)); + } + + void testCorrectedIcoFile() + { + // This is the same ico file with the face fixed + // Loading it without fixing face orientation should be fine + auto mesh = readMeshFromFileNoFix("rbc_ico_720_correct.msh"); + CPPUNIT_ASSERT(checkMeshOrientation(*mesh)); + } + + void testSimulationOutputFile() + { + // This is a mesh taken from a simulation in Timm's code, which should have correct face orientation by definition + auto mesh = readMeshFromFileNoFix("992Particles_rank3_26_t992.msh"); + CPPUNIT_ASSERT(checkMeshOrientation(*mesh)); + } + }; + + CPPUNIT_TEST_SUITE_REGISTRATION (LoadingTimmMeshTests); + } + } +} + +#endif // ONCE diff --git a/Code/unittests/resources/992Particles_rank3_26_t992.msh b/Code/unittests/resources/992Particles_rank3_26_t992.msh new file mode 100644 index 000000000..3f2f9d7c8 --- /dev/null +++ b/Code/unittests/resources/992Particles_rank3_26_t992.msh @@ -0,0 +1,1091 @@ +$MeshFormat +2 0 8 +$EndMeshFormat +$Nodes +362 +1 0.811695362 4.333258782 -4.176194692 +2 -2.923251842 1.517020378 5.394796825 +3 3.05870464 -1.489493217 -5.19990685 +4 -1.137122844 -4.324765053 4.114080882 +5 -0.32959721 0.301577721 -3.870446706 +6 2.6336787 1.412217293 -2.13639214 +7 -2.631484722 -1.522824135 2.141165233 +8 0.073078419 -0.27688488 3.608213878 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