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And these can easily lead to some unexpected variant calling behavior (e.g. having tens of thousands of filter-passing somatic variants). Potentially, metrics extracted from the BAM file (and during the QC process) might help with implementing such heuristics — e.g. read length, # of reads, information content...
The text was updated successfully, but these errors were encountered:
Things that can go wrong here include:
And these can easily lead to some unexpected variant calling behavior (e.g. having tens of thousands of filter-passing somatic variants). Potentially, metrics extracted from the BAM file (and during the QC process) might help with implementing such heuristics — e.g. read length, # of reads, information content...
The text was updated successfully, but these errors were encountered: