DESCRIPTION

Package: TinderMIX
Type: Package
Title: TinderMIX: An R package to cluster gene expression by contour plots 
Version: 0.1.0
Author: Angela Serra
Maintainer: Angela Serra <angela.serra@tuni.fi>
Authors@R: c(person("Angela", "Serra", role = c("aut", "cre"), email = "angela.serra@tuni.fi"),
             person("Dario","Greco",role = c("aut")))
Description: The TinderMIX package allows to analyse toxicogenomics data with multiple dose levels and time-points. It allows to identify the expression patterns with respect to both variables and to cluster molecular features accordingly. It also identify enriched pathways/go terms that are associated to each cluster.
Depends:
    R (>= 3.4), 
    stats,
    utils,
    AnnotationDbi,
    gProfileR,
    gtools,
    reshape,
    plotly,
    clv,
    gplots,
    org.Hs.eg.db, 
    org.Mm.eg.db, 
    org.Rn.eg.db,
    xlsx,
    pracma,
    raster,
    wordcloud,
    ggplot2,
    fmsb,
    biomaRt
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Suggests: 
    knitr,
    rmarkdown,
    testthat
VignetteBuilder: knitr