diff --git a/variant-analysis-workflow.yml b/variant-analysis-workflow.yml
deleted file mode 100644
index 5bfb05a9..00000000
--- a/variant-analysis-workflow.yml
+++ /dev/null
@@ -1,226 +0,0 @@
-name: CodeQL Variant Analysis
-# `run-name` can contain expressions, and will override the `name` once the workflow starts running
-run-name: ${{ github.event.inputs.workflow_name }}
-
-env:
-  CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT: true
-  CODEQL_VARIANT_ANALYSIS_ACTION_WAIT_ON_RATE_LIMIT: ${{ (vars.MRVA_WAIT_ON_RATE_LIMIT && true) || '' }}
-
-on: dynamic
-
-jobs:
-  setup:
-    runs-on: ubuntu-latest
-    outputs:
-      repoNwoChunks: ${{ steps.split.outputs.repoNwoChunks }}
-    permissions: {}
-
-    steps:
-      - name: Do not allow reruns
-        if: github.run_attempt != 1
-        run: |
-          echo "::error title=Reruns not supported::Multi-repository variant analysis does not support reruns. Please create a new variant analysis to run again."
-          exit 1
-      - name: Mask download URL
-        run: |
-          echo "::add-mask::$(jq .inputs.instructions_url "$GITHUB_EVENT_PATH")"
-
-      - name: Output matrix elements
-        id: split
-        run: |
-          curl --fail --show-error --location --retry 10 "$(jq --raw-output .inputs.instructions_url "$GITHUB_EVENT_PATH")" | \
-            jq --raw-output '"repoNwoChunks=\(.repoNwoChunks)"' >> $GITHUB_OUTPUT
-
-      - name: Output error
-        if: failure()
-        run: |
-          echo "::error title=Error downloading instructions file::The instructions file could not be downloaded. The instructions file URL is only valid for 24 hours, please create a new variant analysis to retry."
-
-  run:
-    runs-on: ${{ vars.MRVA_RUNNER_OS && fromJSON(vars.MRVA_RUNNER_OS) || 'ubuntu-latest' }}
-    needs:
-      - setup
-    continue-on-error: true
-    strategy:
-      fail-fast: false
-      matrix:
-        repoNwos: ${{ fromJSON(needs.setup.outputs.repoNwoChunks) }}
-    permissions: {}
-
-    steps:
-      - name: Do not allow reruns
-        if: github.run_attempt != 1
-        run: |
-          echo "::error title=Reruns not supported::Multi-repository variant analysis does not support reruns. Please create a new variant analysis to run again."
-          exit 1
-      # To use the action in this repository, we need to check out the repository
-      - name: Checkout codeql-variant-analysis-action repository
-        uses: actions/checkout@v4
-        with:
-          repository: "github/codeql-variant-analysis-action"
-          ref: ${{ github.event.inputs.action_repo_ref }}
-
-      - name: Mask signed auth token
-        run: |
-          echo "::add-mask::$(jq --raw-output .inputs.signed_auth_token "$GITHUB_EVENT_PATH")"
-
-      - name: Mask download URL
-        run: |
-          echo "::add-mask::$(jq --raw-output .inputs.instructions_url "$GITHUB_EVENT_PATH")"
-
-      # Download and use ::add::mask for all tokens.
-      # Theoretically we'll only output a subset of the tokens. Unless it causes a
-      # performance issue, we may as well mask all tokens to be extra safe.
-      # Note that masking does not persist to other/future jobs in the same workflow.
-      - name: Download and mask tokens
-        id: download-mask-tokens
-        run: |
-          curl --fail --show-error --location --retry 10 --output instructions.json "$(jq --raw-output .inputs.instructions_url "$GITHUB_EVENT_PATH")"
-          jq '.repositories | .[].pat | select( . != null )' --raw-output instructions.json | \
-            xargs -I {} echo "::add-mask::{}"
-
-      - name: Output error
-        if: failure() && steps.download-mask-tokens.outcome == 'failure'
-        run: |
-          echo "::error title=Error downloading instructions file::The instructions file could not be downloaded. The instructions file URL is only valid for 24 hours, please create a new variant analysis to retry."
-
-      # Extract the subset of the repositories input that we'll be analysing for this
-      # job, using the repoNwos matrix input.
-      - name: Compute subset of repos
-        id: repos
-        shell: node {0}
-        run: |
-          const fs = require('fs');
-          const process = require('process');
-
-          const allRepos = JSON.parse(fs.readFileSync("instructions.json")).repositories;
-          const repoNwos = new Set(${{ toJSON(matrix.repoNwos) }});
-          const repositories = allRepos.filter(r => repoNwos.has(r.nwo));
-
-          const githubOutput = process.env.GITHUB_OUTPUT;
-          fs.appendFileSync(githubOutput, `repositories=${JSON.stringify(repositories)}`);
-
-      - name: Run query
-        uses: ./query
-        env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-        with:
-          controller_repo_id: ${{ github.repository_id }}
-          query_pack_url: ${{ github.event.inputs.query_pack_url }}
-          language: ${{ github.event.inputs.language }}
-          repositories: ${{ steps.repos.outputs.repositories }}
-          variant_analysis_id: ${{ github.event.inputs.variant_analysis_id }}
-          instructions_path: instructions.json
-          signed_auth_token: ${{ github.event.inputs.signed_auth_token }}
-
-      - name: Handle workflow failed
-        if: failure() && github.run_attempt == 1
-        uses: ./update-repo-task-status
-        env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-        with:
-          workflow_status: "failed"
-          controller_repo_id: ${{ github.repository_id }}
-          repositories: ${{ steps.repos.outputs.repositories }}
-          variant_analysis_id: ${{ github.event.inputs.variant_analysis_id }}
-          signed_auth_token: ${{ github.event.inputs.signed_auth_token }}
-
-  update-repo-tasks-statuses-cancelled:
-    runs-on: ubuntu-latest
-    if: cancelled()
-    needs:
-      - run
-    permissions: {}
-
-    steps:
-      - name: Do not allow reruns
-        if: github.run_attempt != 1
-        run: |
-          echo "::error title=Reruns not supported::Multi-repository variant analysis does not support reruns. Please create a new variant analysis to run again."
-          exit 1
-      # To use the action in this repository, we need to check out the repository
-      - name: Checkout codeql-variant-analysis-action repository
-        uses: actions/checkout@v4
-        with:
-          repository: "github/codeql-variant-analysis-action"
-          ref: ${{ github.event.inputs.action_repo_ref }}
-
-      - name: Mask signed auth token
-        run: |
-          echo "::add-mask::$(jq --raw-output .inputs.signed_auth_token "$GITHUB_EVENT_PATH")"
-
-      - name: Mask download URL
-        run: |
-          echo "::add-mask::$(jq --raw-output .inputs.instructions_url "$GITHUB_EVENT_PATH")"
-
-      # Download and use ::add::mask for all tokens.
-      # Note that masking does not persist to other/future jobs in the same workflow.
-      - name: Download and mask tokens
-        run: |
-          curl --fail --show-error --location --retry 10 --output instructions.json "$(jq --raw-output .inputs.instructions_url "$GITHUB_EVENT_PATH")"
-          jq '.repositories | .[].pat | select( . != null )' --raw-output instructions.json | \
-            xargs -I {} echo "::add-mask::{}"
-
-      # Extract the repositories that were analyzed in this workflow from the instructions file.
-      - name: Extract repos
-        id: repos
-        run: |
-          echo "repositories=$(jq --raw-output --compact-output .repositories instructions.json)" >> $GITHUB_OUTPUT
-
-      - name: Handle workflow cancelled
-        uses: ./update-repo-task-statuses
-        env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-        with:
-          workflow_status: "canceled"
-          controller_repo_id: ${{ github.repository_id }}
-          instructions_path: instructions.json
-          variant_analysis_id: ${{ github.event.inputs.variant_analysis_id }}
-          signed_auth_token: ${{ github.event.inputs.signed_auth_token }}
-
-  update-repo-tasks-statuses-failure:
-    runs-on: ubuntu-latest
-    if: failure()
-    needs:
-      - run
-    permissions: {}
-
-    steps:
-      - name: Do not allow reruns
-        if: github.run_attempt != 1
-        run: |
-          echo "::error title=Reruns not supported::Multi-repository variant analysis does not support reruns. Please create a new variant analysis to run again."
-          exit 1
-      # To use the action in this repository, we need to check out the repository
-      - name: Checkout codeql-variant-analysis-action repository
-        uses: actions/checkout@v4
-        with:
-          repository: "github/codeql-variant-analysis-action"
-          ref: ${{ github.event.inputs.action_repo_ref }}
-
-      - name: Mask signed auth token
-        run: |
-          echo "::add-mask::$(jq --raw-output .inputs.signed_auth_token "$GITHUB_EVENT_PATH")"
-
-      - name: Mask download URL
-        run: |
-          echo "::add-mask::$(jq --raw-output .inputs.instructions_url "$GITHUB_EVENT_PATH")"
-
-      # Download and use ::add::mask for all tokens.
-      # Note that masking does not persist to other/future jobs in the same workflow.
-      - name: Download and mask tokens
-        run: |
-          curl --fail --show-error --location --retry 10 --output instructions.json "$(jq --raw-output .inputs.instructions_url "$GITHUB_EVENT_PATH")"
-          jq '.repositories | .[].pat | select( . != null )' --raw-output instructions.json | \
-            xargs -I {} echo "::add-mask::{}"
-
-      - name: Handle workflow cancelled
-        uses: ./update-repo-task-statuses
-        env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-        with:
-          workflow_status: "failed"
-          controller_repo_id: ${{ github.repository_id }}
-          instructions_path: instructions.json
-          variant_analysis_id: ${{ github.event.inputs.variant_analysis_id }}
-          signed_auth_token: ${{ github.event.inputs.signed_auth_token }}