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devise a way to bootstrap visualizations repo during Galaxy startup #2915

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martenson opened this issue Sep 12, 2016 · 3 comments
Closed

devise a way to bootstrap visualizations repo during Galaxy startup #2915

martenson opened this issue Sep 12, 2016 · 3 comments

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@martenson
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martenson commented Sep 12, 2016

Given we will have https://github.com/guerler/galaxy-charts under our GH organization I believe we want to fetch it during the startup based on a config value changed by an admin(auto_init_viz?). Once the fetched files are in place Galaxy should be aware of it/check its presence (registry) and propagate the information to the frontend - so UI can be rendered appropriately offering the viz to the enduser.

Does this sound feasible?
@natefoo @guerler @jmchilton @jxtx @jgoecks @erasche @dannon

xrefs:
#2875 - charts to external repo
#1191 - distribute viz through TS
#1380 - make viz plugins more portable
#2861 - add BioJS plugins to codebase (closed)

@martenson
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One thing to mind is to not try build a second Tool Shed which this kinda leads to. E.g. how to treat updates? Where is the UI to manage these visualizations?

@natefoo
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natefoo commented Oct 12, 2016

Shouldn't there be a config file that allows an admin to configure which visualizations to fetch?

@martenson
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for now the charts extensions stay with the galaxy codebase, see #2875 for details

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