- Bug fix and changes:
- Bioconductor related packages are suggested
- Added .on_attach() for smooth CRAN checks
- Minor improvements
- Added:
comparison.scheme
either set toOVO
(default) which will compare each contrasts to each other. If it's set toOVA
each contrast will be compared to rest.
- Added:
- An extra argument
sv.number
is added if user wants to set the number of surrogate variables.
More info here. verbose
argument, default set toTRUE
. I think, I have implemented this in a really cool way!cinaRgenesets
added to vignette.
- An extra argument
-
Added:
heatmap_differential
function to be able to plot the heatmaps of a given comparison.show_comparisons
is added to see the available comparisons before you plot differential heatmaps.
-
Changed:
heatmap_plot
is now renamed toheatmap_var_peaks
, which makes more sense.
This version is even cooler, lol:
- Comparisons are now sorted according to
contrast
order - Added bulk RNA-seq support/documentation
- Removed many dependencies
- Small bug fixes and improvements
cinaR
is published in CRAN repository!