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When running 'devtools::check()', reports no tools found. Also should fix the other warnings that are included in this output:
checking Rd \usage sections ... WARNING
Undocumented arguments in documentation object 'biome_to_input'
‘biomes’
Documented arguments not in \usage in documentation object 'biome_to_input':
‘biome’
Undocumented arguments in documentation object 'calc_ghgv'
‘eco’
Documented arguments not in \usage in documentation object 'calc_ghgv':
‘eco_json’
... 16 lines ...
Undocumented arguments in documentation object 'str2LogicalOrNumeric'
‘string’
Documented arguments not in \usage in documentation object 'str2LogicalOrNumeric':
‘x’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.dockerignore
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
checking DESCRIPTION meta-information ... NOTE
License components with restrictions not permitted:
FreeBSD + file LICENSE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
‘rmarkdown’
A package should be listed in only one of these fields.
checking top-level files ... NOTE
Non-standard files/directories found at top level:
‘Dockerfile’ ‘README.Rmd’ ‘README.html’ ‘Rserv.conf’ ‘start.R’
checking R code for possible problems ... NOTE
plot_ghgv: warning in brewer_pal(pal = "Greens"): partial argument
match of 'pal' to 'palette'
plot_ghgv: warning in brewer_pal(pal = "Blues"): partial argument match
of 'pal' to 'palette'
calc_ghgv: no visible binding for global variable ‘output_formats’
get_biome: no visible global function definition for ‘read.csv’
get_biome: no visible binding for global variable ‘Value’
get_biome: no visible global function definition for ‘na.omit’
get_biome: no visible binding for global variable ‘Zone’
... 11 lines ...
write_plot: no visible global function definition for ‘png’
write_plot: no visible global function definition for ‘dev.off’
write_plot: no visible global function definition for ‘svg’
Undefined global functions or variables:
Biome CODE Location Order Value Zone dev.off na.omit output_formats
png read.csv reorder svg value variable write.csv
Consider adding
importFrom("grDevices", "dev.off", "png", "svg")
importFrom("stats", "na.omit", "reorder")
importFrom("utils", "read.csv", "write.csv")
to your NAMESPACE file.
The text was updated successfully, but these errors were encountered:
When running 'devtools::check()', reports no tools found. Also should fix the other warnings that are included in this output:
The text was updated successfully, but these errors were encountered: