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datasets.txt
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dataset spatial_locs expr_matrix metadata segmentations
ST_OB1 https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2016_ST_olfactory_bulb/cell_locations/Rep11_MOB_0_location.txt https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2016_ST_olfactory_bulb/count_matrix/Rep11_MOB_0_expr.txt
ST_OB2 https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2016_ST_olfactory_bulb/cell_locations/Rep12_MOB_0_location.txt https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2016_ST_olfactory_bulb/count_matrix/Rep12_MOB_0_expr.txt
codex_spleen https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2018_codex_spleen/cell_locations/codex_BALBc_3_coord.txt https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2018_codex_spleen/count_matrix/codex_BALBc_3_expression.txt.gz https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2018_codex_spleen/cell_locations/codex_BALBc_3_annotation.txt|https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2018_codex_spleen/cell_locations/cell_type_annotation.csv
cycif_PDAC https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2018_CyCIF_PDAC/cell_locations/cyCIF_PDAC_coord.txt https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2018_CyCIF_PDAC/count_matrix/cyCIF_PDAC_expression.txt.gz https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2018_CyCIF_PDAC/cell_locations/cyCIF_PDAC_annot.txt|https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2018_CyCIF_PDAC/raw_data/canvas.png
starmap_3D_cortex https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2018_starmap_3D_cortex/cell_locations/STARmap_3D_data_cell_locations.txt https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2018_starmap_3D_cortex/count_matrix/STARmap_3D_data_expression.txt
osmfish_SS_cortex https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2018_osmFISH_SScortex/cell_locations/osmFISH_prep_cell_coordinates.txt https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2018_osmFISH_SScortex/count_matrix/osmFISH_prep_expression.txt https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2018_osmFISH_SScortex/raw_data/osmFISH_prep_cell_metadata.txt
merfish_preoptic https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2018_merFISH_science_hypo_preoptic/cell_locations/merFISH_3D_data_cell_locations.txt https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2018_merFISH_science_hypo_preoptic/count_matrix/merFISH_3D_data_expression.txt.gz https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2018_merFISH_science_hypo_preoptic/cell_locations/merFISH_3D_metadata.txt
seqfish_SS_cortex https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2019_seqfish_plus_SScortex/cell_locations/cortex_svz_centroids_coord.txt https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2019_seqfish_plus_SScortex/count_matrix/cortex_svz_expression.txt https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2019_seqfish_plus_SScortex/cell_locations/cortex_svz_centroids_annot.txt
seqfish_OB https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2019_seqfish_plus_olfactory_bulb/cell_locations/OB_centroids_coord.txt https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2019_seqfish_plus_olfactory_bulb/count_matrix/OB_expression.txt https://raw.githubusercontent.com/drieslab/spatial-datasets/master/data/2019_seqfish_plus_olfactory_bulb/cell_locations/OB_centroids_annot.txt
slideseq_cerebellum https://zenodo.org/record/4034228/files/BeadLocationsForR.csv https://zenodo.org/record/4034228/files/MappedDGEForR.csv https://zenodo.org/record/4034228/files/l1.cerebellum.cellID.txt|https://zenodo.org/record/4034228/files/l1.cerebellum.cells.nonblood.txt|https://zenodo.org/record/4034228/files/l1.cerebellum.cells.txt|https://zenodo.org/record/4034228/files/l1.cerebellum.class.txt|https://zenodo.org/record/4034228/files/l1.cerebellum.genes.txt|https://zenodo.org/record/4034228/files/l1.cerebellum.txt
ST_SCC https://github.com/drieslab/spatial-datasets/raw/master/data/2020_ST_SCC/cell_locations/P2_1_spatial_locs.csv|https://github.com/drieslab/spatial-datasets/raw/master/data/2020_ST_SCC/cell_locations/P2_2_spatial_locs.csv|https://github.com/drieslab/spatial-datasets/raw/master/data/2020_ST_SCC/cell_locations/P2_3_spatial_locs.csv https://github.com/drieslab/spatial-datasets/raw/master/data/2020_ST_SCC/count_matrix/P2_1_expression.csv|https://github.com/drieslab/spatial-datasets/raw/master/data/2020_ST_SCC/count_matrix/P2_2_expression.csv|https://github.com/drieslab/spatial-datasets/raw/master/data/2020_ST_SCC/count_matrix/P2_3_expression.csv https://github.com/drieslab/spatial-datasets/raw/master/data/2020_ST_SCC/scRNAseq/p2_metadata.rds|https://github.com/drieslab/spatial-datasets/raw/master/data/2020_ST_SCC/scRNAseq/scrna_expr.rds|https://github.com/drieslab/spatial-datasets/raw/master/data/2020_ST_SCC/scRNAseq/normalized_sc_matrix.RDS|https://github.com/drieslab/spatial-datasets/raw/master/data/2020_ST_SCC/scRNAseq/cell_type_vector.RDS|https://github.com/drieslab/spatial-datasets/raw/master/data/2020_ST_SCC/scRNAseq/sign_list.RDS|https://github.com/drieslab/spatial-datasets/raw/master/data/2020_ST_SCC/lowres_images/P2_1_0.0625.jpg|https://github.com/drieslab/spatial-datasets/raw/master/data/2020_ST_SCC/lowres_images/P2_2_0.0625.jpg|https://github.com/drieslab/spatial-datasets/raw/master/data/2020_ST_SCC/lowres_images/P2_3_0.0625.jpg|https://github.com/drieslab/spatial-datasets/raw/master/data/2020_ST_SCC/imgReg.zip|https://github.com/drieslab/spatial-datasets/raw/master/data/2020_ST_SCC/PairsLigRec.txt
scRNA_prostate https://github.com/drieslab/spatial-datasets/raw/master/data/2022_scRNAseq_human_prostate/count_matrix/prostate_sc_expression_matrix.csv.gz https://github.com/drieslab/spatial-datasets/raw/master/data/2022_scRNAseq_human_prostate/cell_metadata/prostate_sc_metadata.csv
scRNA_mouse_brain https://github.com/drieslab/spatial-datasets/raw/master/data/2022_scRNAseq_mouse_brain/count_matrix/brain_sc_expression_matrix.txt.gz https://github.com/drieslab/spatial-datasets/raw/master/data/2022_scRNAseq_mouse_brain/cell_metadata/brain_sc_metadata.csv
mol_cart_lung_873_C1 https://github.com/drieslab/spatial-datasets/raw/master/data/2022_mol_cart_human_lung/segmentations/Resolve_hLung_stardist.geojson
sg_mini_kidney https://github.com/drieslab/spatial-datasets/data/2023_spatial_genomics_mouse_kidney/Raw.zip