Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

ordercells function error for large datasets #503

Open
qimiaonnegliguo opened this issue Oct 5, 2023 · 0 comments
Open

ordercells function error for large datasets #503

qimiaonnegliguo opened this issue Oct 5, 2023 · 0 comments

Comments

@qimiaonnegliguo
Copy link

Hi thanks for the powerful tool and your work. I met an issue when tried the final step of monocle2, which is the ordercells function.

The error is 'error in graph.adjacency.dense(adjmatrix, mode = mode, weighted = weighted, : long vectors not supported yet: ../../src/include/rinlinedfuns.h:537 calls: ordercells ... project2mst -> graph.adjacency -> graph.adjacency.dense'

I googled for some previous answers and found it may be due to my cell number is > 50k? So I start this request to see if there is any method to help monocle2 process sample with >50k cells.

Thank you very much.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant