ci.yml

name: Automated Tests

on: ["push"]

jobs:
  build:
    runs-on: [self-hosted]
    steps:
    - uses: actions/checkout@v3
      with:
        submodules: 'true'
    - name: Setup pipenv
      run: |
        pip install --upgrade pip
        python -m venv venv
        ./venv/bin/pip install --upgrade pip
        ./venv/bin/pip install pipenv
    - name: Install dependencies
      run: |
        PIPENV_VENV_IN_PROJECT=1 ./venv/bin/pipenv sync -d
    # - name: Dummy settings file
    #   run: cp phylowatch/settings_default.py phylowatch/settings.py
    - name: Static checks
      run: |
        ./.venv/bin/flake8 phylowatch --show-source --statistics
        ./.venv/bin/flake8 tests --show-source --statistics
      continue-on-error: true
    - name: Unit tests
      run: ./.venv/bin/pytest --cov-config=.coveragerc --cov --cov-report=xml:coverage.xml --mpl tests
    - name: Upload coverage reports to Codecov with GitHub Action
      uses: codecov/codecov-action@v3
      with:
        token: ${{ secrets.CODECOV_TOKEN }}
        root_dir: ${{ github.workspace }}
        files: ${{ github.workspace }}/coverage.xml