From 611a19cd46da5b2ab44a6e949777e44aae307d44 Mon Sep 17 00:00:00 2001
From: Pavel Mazin <iaa.aka@yandex.ru>
Date: Mon, 30 Sep 2024 15:23:29 +0100
Subject: [PATCH] fix merge spots

---
 R/merge.spots.R | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/R/merge.spots.R b/R/merge.spots.R
index 44b49e1..f6f5081 100644
--- a/R/merge.spots.R
+++ b/R/merge.spots.R
@@ -69,7 +69,7 @@ mergeSpots = function(v,gr,image.name=NULL){
   gr$nCount_Spatial = v$nCount_Spatial
   gr$nspots = as.numeric(table(gr$group)[gr$group])
   gr$barcode = rownames(gr)
-  mtx_ = calcColSums(v[['Spatial']]$counts,gr$group,mean = FALSE,verbose = FALSE)
+  mtx_ = calcColSums(v[['Spatial']]$counts,gr$group,mean = FALSE)
 
   # combine spot info
   # either center (if exists) or max covered spot