Singularity.0.9.18

BootStrap: docker
From: python:3.7.4-slim

%files
    ./requirements_docker.txt /tmp/

%post
    BUILDPKGS="build-essential apt-utils \
        python3-dev libhdf5-dev libfreetype6-dev libtool \
        m4 autoconf automake patch bison flex libpng-dev libopenblas-dev \
        tcl-dev tk-dev libxml2-dev zlib1g-dev libffi-dev cmake"
    apt-get update
    apt-get install -y debconf locales && dpkg-reconfigure locales
    apt-get install -y zlib1g hdf5-tools gfortran libgcc1 libstdc++6 musl \
        libopenblas-base tcl tk libxml2 libffi6 less procps
    apt-get install -y $BUILDPKGS

    pip install --no-cache-dir -r /tmp/requirements_docker.txt
    pip install --no-cache-dir --upgrade pyscenic==0.9.18
    pip install --no-cache-dir scanpy==1.4.4.post1

    apt-get remove --purge -y $BUILDPKGS && \
    rm -rf /var/lib/apt/lists/*