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study view add arm-level CNA chart in TCGA shows ancestry data #2119
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inodb
changed the title
CNA in TCGA shows ancestry data
study view add arm-level CNA chart in TCGA shows ancestry data
Nov 10, 2023
@cBioPortal/curation This is a data issue related to study {
"molecularAlterationType": "GENERIC_ASSAY",
"genericAssayType": "ARMLEVEL_CNA",
"datatype": "LIMIT-VALUE",
"name": "Genetic Ancestry",
"description": "Genetic ancestries were determined using five different methods as described in Carrot-Zhang et al (2020). These consensus calls were created based on the ancestral population that received the majority of assignments for each patient. The original data is <a href=\"https://gdc.cancer.gov/about-data/publications/CCG-AIM-2020\">here</a>.",
"showProfileInAnalysisTab": true,
"patientLevel": false,
"molecularProfileId": "acc_tcga_pan_can_atlas_2018_genetic_ancestry",
"studyId": "acc_tcga_pan_can_atlas_2018",
"study": {
"name": "Adrenocortical Carcinoma (TCGA, PanCancer Atlas)",
"description": "Adrenocortical Carcinoma TCGA PanCancer data. The original data is <a href=\"https://gdc.cancer.gov/about-data/publications/pancanatlas\">here</a>. The publications are <a href=\"https://www.cell.com/pb-assets/consortium/pancanceratlas/pancani3/index.html\">here</a>.",
"publicStudy": true,
"pmid": "29625048,29596782,29622463,29617662,29625055,29625050,29617662,32214244,29625049,29850653,36334560",
"citation": "TCGA, Cell 2018",
"groups": "PUBLIC;PANCAN",
"status": 0,
"importDate": "2024-12-19 17:17:35",
"readPermission": true,
"studyId": "acc_tcga_pan_can_atlas_2018",
"cancerTypeId": "acc",
"referenceGenome": "hg19"
}
} |
@dippindots fixed the data. Will reimport the study. |
@ritikakundra Thanks for the quick fix! |
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Go to TCGA Pancan studies, click arm-level tab and click the dropdown
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