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E.g., the hydrogen addon adds energy balance equations for hydrogen, demand for hydrogen, hydrogen conversion, transmission and storage technologies etc. + +```{toctree} +:maxdepth: 1 + + +``` \ No newline at end of file diff --git a/_sources/get_started.md.txt b/_sources/get_started.md.txt new file mode 100644 index 00000000..14e08833 --- /dev/null +++ b/_sources/get_started.md.txt @@ -0,0 +1,13 @@ +# Get Started + +The intention of this tutorial is to teach the user how to install and run Balmorel, using a small test case. + +```{toctree} +:maxdepth: 1 + +get_started/installation.md +get_started/structure.md +get_started/scenario_setup.md +get_started/running_balmorel.md +get_started/outputs.md +``` \ No newline at end of file diff --git a/_sources/get_started/installation.md.txt b/_sources/get_started/installation.md.txt new file mode 100644 index 00000000..71e6fb0b --- /dev/null +++ b/_sources/get_started/installation.md.txt @@ -0,0 +1,20 @@ +# Installation +A [GAMS](https://gams.com/) installation and license is required to run Balmorel. We also recommend installing [git](https://git-scm.com/) to do version control on your Balmorel project. + +A small demo can be run without a GAMS license in the [balmorel-demo](https://github.com/balmorelcommunity/Balmorel/tree/balmorel-demo) branch. + +## Downloading Balmorel Framework and Data +The Balmorel framework can be downloaded from [GitHub](https://github.com/balmorelcommunity/Balmorel) as a .zip file by pressing Code -> Download ZIP. +The corresponding data is in another [GitHub repository](https://github.com/balmorelcommunity/Balmorel_data), and can also be downloaded as a .zip. Place the Balmorel_data folder in Balmorel/base and rename it to "data". + +This installation can also be done using git commands in a command line interface: +```bash +git clone https://github.com/balmorelcommunity/Balmorel.git +cd Balmorel/base +git clone https://github.com/balmorelcommunity/Balmorel_data.git +``` +Remember to rename Balmorel_data to data inside Balmorel/base. + +:::{tip} +If you use [VS Code](https://code.visualstudio.com/?wt.mc_id=DX_841432) with git, this specific placing of the data repository Balmorel_data inside the framework repository Balmorel/base folder will enable you to simultaneously keep track of changes to both the Balmorel framework and data in your workspace. +::: \ No newline at end of file diff --git a/_sources/get_started/outputs.md.txt b/_sources/get_started/outputs.md.txt new file mode 100644 index 00000000..21537a42 --- /dev/null +++ b/_sources/get_started/outputs.md.txt @@ -0,0 +1,11 @@ +# Outputs + +The main outputs after a succesful Balmorel execution are **all_endofmodel.gdx** and **MainResults.gdx**. **all_endofmodel.gdx** contains *everything*, from sets, parameters, decision variablel levels, etc. **MainResults.gdx** is post-processed outputs that are readable to a human energy system analyst. + +We recommend the [interactive bar plotting tool](https://balmorelcommunity.github.io/pybalmorel/autoapi/pybalmorel/classes/index.html#pybalmorel.classes.MainResults.interactive_bar_chart) from the [pybalmorel](https://balmorelcommunity.github.io/pybalmorel/) package for quick inspections. You will also find functions for [plotting maps of transmission capacities](https://balmorelcommunity.github.io/pybalmorel/autoapi/pybalmorel/classes/index.html#pybalmorel.classes.MainResults.plot_map) and [production profiles](https://balmorelcommunity.github.io/pybalmorel/autoapi/pybalmorel/classes/index.html#pybalmorel.classes.MainResults.plot_profile). See examples [here](https://github.com/balmorelcommunity/pybalmorel/blob/master/examples/PostProcessing.ipynb). + +The video below gives some tips on typical plots and practical guidance on analysing results using GAMS, excel or python. +
+ +
+
diff --git a/_sources/get_started/running_balmorel.md.txt b/_sources/get_started/running_balmorel.md.txt new file mode 100644 index 00000000..876efd1f --- /dev/null +++ b/_sources/get_started/running_balmorel.md.txt @@ -0,0 +1,13 @@ +# Running Balmorel + +To setup Balmorel in GAMS Studio, you can drag and drop the Balmorel.gms into GAMS Studio to create a correctly setup project. It is important to ensure that the working directory is in your/path/to/Balmorel/test_run/model, as illustrated in [the Figure](#GAMS_Studio_Setup) below. + +:::{figure} ../img/GAMS_Studio_Setup.jpg +:name: GAMS_Studio_Setup +:alt: How to check the working directory of your GAMS project +:width: 100% +:align: center +Check your working directory by opening View/Project Explorer, and then press the gear icon ⚙️ next to "Balmorel". +::: + +Make sure that Balmorel/test_run/model/Balmorel.gms is the main file and press the green run button ▶️. Balmorel should now optimise model year 2030, 2040, 2050 for Denmark and Norway using the previously specificed timesteps. \ No newline at end of file diff --git a/_sources/get_started/scenario_setup.md.txt b/_sources/get_started/scenario_setup.md.txt new file mode 100644 index 00000000..e2baafa3 --- /dev/null +++ b/_sources/get_started/scenario_setup.md.txt @@ -0,0 +1,56 @@ +# Scenario Setup +Lets start by learning how to execute Balmorel using a small test scenario. Create a new folder in the level of the base folder, a new data and model folder inside of this and copy and paste the Balmorel.gms and cplex.op4 folder from base/model. If you want to call this scenario "test_run" the folder structure should now look like the following: +```bash +Balmorel +├── base +├── test_run +│ ├── data +│ └── model +│ ├── cplex.op4 +│ └── Balmorel.gms +└── simex +``` + +This is how to setup different scenarios in Balmorel. The framework will first attempt to look for files in the test_run, and then in the base folder if the required file did not exist. This means you do not have to copy paste all of the data in base/data everytime you make a new scenario, but can simply add the *changed* data. We will do this below. + +## Prepare Scenario Data +Lets decrease the temporal and spatial resolution significantly, so Balmorel will solve within one or two minutes and we can verify our setup. We can do this by creating new [Y.inc](#y-inc), [S.inc](#s-inc), [T.inc](#t-inc) and [C.inc](#c-inc) files in test_run/data. In GAMS Studio, press File/New..., find the test_run/data folder and save as type "GAMS Include files (*.inc)". Copy and paste the contents from each of the snippets below: + +### Y.inc +```gams +SET Y(YYY) "Years in the simulation" +/ +2030, 2040, 2050 +/; +``` +This will select model years 2030, 2040 and 2050. + +### S.inc +```gams +SET S(SSS) 'Seasons in the simulation' +/ +S14 +/; +``` +This corresponds to selecting week 14 in a year. + +### T.inc +```gams +SET T(TTT) 'Time periods within a season in the simulation' +/ +T001, T005, T009, T013, T017, T021 +/; +``` +This corresponds to selecting hours 00:00, 04:00, 08:00, 12:00, 16:00 and 20:00 on a monday. + +### C.inc +```gams +SET C(CCC) 'Countries in the simulation' +/ +NORWAY +DENMARK +/; +``` +This selects countries Norway and Denmark (which consist of respectively 5 and 2 electricity and hydrogen nodes, corresponding to the bidding zones of Norway and Denmark). + +We are now ready to run Balmorel, see the next page. \ No newline at end of file diff --git a/_sources/get_started/structure.md.txt b/_sources/get_started/structure.md.txt new file mode 100644 index 00000000..310da490 --- /dev/null +++ b/_sources/get_started/structure.md.txt @@ -0,0 +1,25 @@ +# Structure + +When you clone or download Balmorel from GitHub, you will see the following folder structure: +```bash +Balmorel +├── base +│ ├── addons +│ ├── auxils +│ ├── bui +│ ├── data +│ ├── documentation +│ ├── logerror +│ ├── model +│ │ ├── cplex.op4 +│ │ ├── balopt.opt +│ │ └── Balmorel.gms +│ └── output +└── simex +``` +For now, it will be sufficient to focus on the base/model folder and the Balmorel.gms, balopt.inc and cplex.op4 files. +It is good practice to keep files in the base folder unchanged, unless you want a consistent change in data (base/data) or in the equations of the [addons](../addons.md) (base/addons). The addons folder contain modules that can be turned of and on in balopt.inc, Balmorel.gms is the file to execute to run Balmorel and cplex.op4 contain important solver options. We will use these files to execute Balmorel on the next page. + +:::{warning} +Do not rename the base folder! The code of Balmorel needs to be able to locate the base/addons and base/data folders or it will generate errors. +::: diff --git a/_sources/index.md.txt b/_sources/index.md.txt new file mode 100644 index 00000000..99a2788f --- /dev/null +++ b/_sources/index.md.txt @@ -0,0 +1,30 @@ +# Balmorel +Balmorel is an open-source, bottom-up partial equilibrium energy system model[^1]. It has traditionally been applied to investigate decarbonisation pathways of sector-coupled energy systems[^2], infrastructure[^3], renewable fuel production[^4] and more. Results and framework has been validated against other open-source models[^5] [^6]. + +A tutorial on how to get started can be found [here](get_started.md). + +```{toctree} +:maxdepth: 1 +:caption: Balmorel +:hidden: + +get_started +addons +pre_processing +running_on_hpc +``` + +```{toctree} +:maxdepth: 1 +:caption: Reference +:hidden: + +about +``` + +[^1]: Wiese, Frauke, Rasmus Bramstoft, Hardi Koduvere, Amalia Rosa Pizarro Alonso, Olexandr Balyk, Jon Gustav Kirkerud, Åsa Grytli Tveten, Torjus Folsland Bolkesjø, Marie Münster, and Hans V. Ravn. “Balmorel Open Source Energy System Model.” Energy Strategy Reviews 20 (2018): 26–34. [https://doi.org/10.1016/j.esr.2018.01.003](https://doi.org/10.1016/j.esr.2018.01.003). +[^2]: Gea-Bermúdez, Juan, Ida Græsted Jensen, Marie Münster, Matti Koivisto, Jon Gustav Kirkerud, Yi-kuang Chen, and Hans Ravn. “The Role of Sector Coupling in the Green Transition: A Least-Cost Energy System Development in Northern-Central Europe towards 2050.” Applied Energy 289 (May 2021): 116685. [https://doi.org/10.1016/j.apenergy.2021.116685](https://doi.org/10.1016/j.apenergy.2021.116685). +[^3]: Kountouris, Ioannis, Rasmus Bramstoft, Theis Madsen, Juan Gea-Bermúdez, Marie Münster, and Dogan Keles. “A Unified European Hydrogen Infrastructure Planning to Support the Rapid Scale-up of Hydrogen Production.” Nature Communications 15, no. 1 (June 29, 2024): 5517. [https://doi.org/10.1038/s41467-024-49867-w](https://doi.org/10.1038/s41467-024-49867-w). +[^4]: Bramstoft, Rasmus, Amalia Pizarro-Alonso, Ida Græsted Jensen, Hans Ravn, and Marie Münster. “Modelling of Renewable Gas and Renewable Liquid Fuels in Future Integrated Energy Systems.” Applied Energy 268 (June 15, 2020): 114869. [https://doi.org/10.1016/j.apenergy.2020.114869](https://doi.org/10.1016/j.apenergy.2020.114869). +[^5]: Ouwerkerk, Jonas van, Karlo Hainsch, Soner Candas, Christoph Muschner, Stefanie Buchholz, Stephan Günther, Hendrik Huyskens, et al. “Comparing Open Source Power System Models - A Case Study Focusing on Fundamental Modeling Parameters for the German Energy Transition.” Renewable & Sustainable Energy Reviews 161, no. 112331 (2022). [https://doi.org/10.1016/j.rser.2022.112331](https://doi.org/10.1016/j.rser.2022.112331). +[^6]: Candas, Soner, Christoph Muschner, Stefanie Buchholz, Rasmus Bramstoft, Jonas van Ouwerkerk, Karlo Hainsch, Konstantin Löffler, et al. “Code Exposed: Review of Five Open-Source Frameworks for Modeling Renewable Energy Systems.” Renewable and Sustainable Energy Reviews 161 (June 2022): 112272. [https://doi.org/10.1016/j.rser.2022.112272](https://doi.org/10.1016/j.rser.2022.112272). diff --git a/_sources/pre_processing.md.txt b/_sources/pre_processing.md.txt new file mode 100644 index 00000000..9b80ed73 --- /dev/null +++ b/_sources/pre_processing.md.txt @@ -0,0 +1,7 @@ +# Pre-Processing + +The data format of Balmorel is .inc-files. There are different approaches to pre-processing, the simplest being creating a new .inc-file through GAMS Studio. [xls2gams](https://www.gams.com/latest/docs/T_XLS2GMS.html) Can be used to produce .inc-files from excel sheets, and for python we recommend the [IncFile class](https://balmorelcommunity.github.io/pybalmorel/autoapi/pybalmorel/classes/index.html#pybalmorel.classes.IncFile) from our [pybalmorel](https://balmorelcommunity.github.io/pybalmorel) package. + +```{toctree} +:maxdepth: 1 +``` \ No newline at end of file diff --git a/_sources/running_on_hpc.md.txt b/_sources/running_on_hpc.md.txt new file mode 100644 index 00000000..a15fa916 --- /dev/null +++ b/_sources/running_on_hpc.md.txt @@ -0,0 +1,13 @@ +# Running on HPC + +It will probably be necessary to run Balmorel on a high-performance computer (HPC). + +This section will explain how to do this on the [LSF 10 Cluster](https://www.hpc.dtu.dk/?page_id=2513) of the Technical University of Denmark, but the instructions may also be applicable to other Linux-based clusters. Note that obviously only students and employees of DTU can access this specific cluster. + +```{toctree} +:maxdepth: 1 + +running_on_hpc/installation.md +running_on_hpc/access.md +running_on_hpc/submitting_a_job.md +``` \ No newline at end of file diff --git a/_sources/running_on_hpc/access.md.txt b/_sources/running_on_hpc/access.md.txt new file mode 100644 index 00000000..1b087637 --- /dev/null +++ b/_sources/running_on_hpc/access.md.txt @@ -0,0 +1,43 @@ +# Accessing the Cluster + +A general guide for accessing the DTU clusters through the so-called login nodes can be found [here](https://www.hpc.dtu.dk/?page_id=2501). We go through examples using PuTTY for accessing these nodes below. + +Note that you should not transfer large files via the login nodes (e.g. login.gbar.dtu.dk), but through the transfer nodes (e.g. transfer.gbar.dtu.dk). A [general guide](https://www.hpc.dtu.dk/?page_id=4377) exists for transferring files to and from the cluster, and we provided an example of how to access the transfer node using WinSCP below. + +:::{warning} +- Remember to be on a DTU network, either by physically being at DTU or through a VPN, such as [Cisco VPN](https://itswiki.compute.dtu.dk/index.php/Cisco_VPN). +- Do not transfer large files or run resource intensive programs directly on the login nodes!
+See [WinSCP Example](#winscp-example) for how to transfer large files and [Job Submission](submitting_a_job.md) for submitting resource intensive programs. +::: + +## PuTTY Example + +We will use PuTTY to explain how to submit jobs. When starting PuTTY, a graphical user interface (GUI) appears as illustrated in the [Figure](putty_login) below. +:::{figure} ../img/putty_login.jpg +:name: putty_login +:alt: Logging into PuTTY +:width: 70% +:align: center +The graphical user interface that appears when starting up PuTTY. +::: +Type login.gbar.dtu.dk as the host-name and enter. This results in a command prompt that asks for your username, see the [code snippet](putty_login_cli) below. Write your DTU initials or student number. This is followed by a password prompt. Note that it does not show your password as you type it for security purposes, but your keystrokes are being registered. Type your DTU password confidently and press enter. You can also (in Windows) copy your password and paste it into the password prompt with shift + enter (not ctrl + V). + + +:::{code-block} console +:name: putty_login_cli +:caption: The prompts appearing after entering the PuTTY setup. +login as: user_name +user_name@login.gbar.dtu.dk's password: +::: + + +## WinSCP Example + +When you open WinSCP, the GUI illustrated in the [Figure](winscp_login) below will appear. Type your user name followed by @transfer.gbar.dtu.dk in the "Host name" form and press enter. Once again, you will need to write your DTU password. You will then enter the main WinSCP GUI, where you can browse local files in the left window and HPC files in the right window. Files can be transferred by dragging and dropping between the two systems. +:::{figure} ../img/winscp_login.jpg +:name: winscp_login +:alt: Logging into PuTTY +:width: 100% +:align: center +The graphical user interface that appears when starting up WinSCP. +::: \ No newline at end of file diff --git a/_sources/running_on_hpc/installation.md.txt b/_sources/running_on_hpc/installation.md.txt new file mode 100644 index 00000000..a35115c0 --- /dev/null +++ b/_sources/running_on_hpc/installation.md.txt @@ -0,0 +1,9 @@ +# Installation + +We will describe how to transfer files through [WinSCP](https://winscp.net/eng/index.php) and submit jobs through [PuTTY](https://putty.org/), but it is possible to access the clusters in many ways, such as through [Visual Studio Code](https://code.visualstudio.com/docs/remote/ssh) or [ThinLinc](https://www.gbar.dtu.dk/index.php/faq/43-thinlinc). + +:::{admonition} Software Requirements +- Download and install [WinSCP](https://winscp.net/eng/index.php) for transferring files to the HPC. +- Download and install [PuTTY](https://www.chiark.greenend.org.uk/~sgtatham/putty/latest.html) for submitting jobs. +- Download and install [Cisco VPN](https://itswiki.compute.dtu.dk/index.php/Cisco_VPN) to access DTU network from home. +::: \ No newline at end of file diff --git a/_sources/running_on_hpc/submitting_a_job.md.txt b/_sources/running_on_hpc/submitting_a_job.md.txt new file mode 100644 index 00000000..6fa0c80d --- /dev/null +++ b/_sources/running_on_hpc/submitting_a_job.md.txt @@ -0,0 +1,55 @@ +# Submitting a Job + +We refer to the [best practice guide](https://www.hpc.dtu.dk/?page_id=4204) by DTU Computing Center on how to figure out what resources to ask for. + +:::{warning} +Remember to study the log report after your job finishes, so you can be more accurate on what resources your job needs in the next submission! +::: + +## Job Script + +After having transferred our Balmorel model through WinSCP (see [previous page](access.md)), we want it. We need to submit a job, which means creating a job script that asks for the right amount of memory usage and time before completion. This is done through a job script, illustrated in the code snippet below. We refer to [this general guide](https://www.hpc.dtu.dk/?page_id=1416) by DTU Computing Center for the exact explanations of the different elements. + +Note that the bottom commands assumes that the job script is placed inside your Balmorel folder, and that your Balmorel project contains a "scenario1" scenario - see [how to create new scenarios](../get_started/scenario_setup.md). The `--threads=$LSB_DJOB_NUMPROC` command makes sure that Balmorel does not use more cores than defined in your job script (four in this case, due to `-n 4`) +```batch +#!/bin/sh +### General options +### -- specify queue -- +#BSUB -q hpc +### -- set the job Name -- +#BSUB -J My_Application +### -- ask for number of cores (default: 1) -- +#BSUB -n 4 +### -- specify that the cores must be on the same host -- +#BSUB -R "span[hosts=1]" +### -- specify that we need 4GB of memory per core/slot -- +#BSUB -R "rusage[mem=4GB]" +### -- specify that we want the job to get killed if it exceeds 5 GB per core/slot -- +#BSUB -M 5GB +### -- set walltime limit: hh:mm -- +#BSUB -W 24:00 +### -- set the email address -- +# please uncomment the following line and put in your e-mail address, +# if you want to receive e-mail notifications on a non-default address +##BSUB -u your_email_address +### -- send notification at start -- +#BSUB -B +### -- send notification at completion -- +#BSUB -N +### -- Specify the output and error file. %J is the job-id -- +### -- -o and -e mean append, -oo and -eo mean overwrite -- +#BSUB -o Output_%J.out +#BSUB -e Output_%J.err + +# Go to model folder of your scenario - this assumes that the job script is at the same level of the Balmorel folder +cd scenario1/model +# Run Balmorel +gams Balmorel --threads=$LSB_DJOB_NUMPROC +``` + +## Submitting the Job in PuTTY +Log in to PuTTY, change directory to inside your Balmorel folder (i.e. the `cd` command below), and submit the job that we created above using the `bsub` command. This assumes that you saved the job script as "job_script.sh". +```bash +cd path/to/Balmorel +bsub < job_script.sh +``` diff --git a/_static/_sphinx_javascript_frameworks_compat.js b/_static/_sphinx_javascript_frameworks_compat.js new file mode 100644 index 00000000..81415803 --- /dev/null +++ b/_static/_sphinx_javascript_frameworks_compat.js @@ -0,0 +1,123 @@ +/* Compatability shim for jQuery and underscores.js. + * + * Copyright Sphinx contributors + * Released under the two clause BSD licence + */ + +/** + * small helper function to urldecode strings + * + * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/decodeURIComponent#Decoding_query_parameters_from_a_URL + */ +jQuery.urldecode = function(x) { + if (!x) { + return x + } + return decodeURIComponent(x.replace(/\+/g, ' ')); +}; + +/** + * small helper function to urlencode strings + */ +jQuery.urlencode = encodeURIComponent; + +/** + * This function returns the parsed url parameters of the + * current request. Multiple values per key are supported, + * it will always return arrays of strings for the value parts. + */ +jQuery.getQueryParameters = function(s) { + if (typeof s === 'undefined') + s = document.location.search; + var parts = s.substr(s.indexOf('?') + 1).split('&'); + var result = {}; + for (var i = 0; i < parts.length; i++) { + var tmp = parts[i].split('=', 2); + var key = jQuery.urldecode(tmp[0]); + var value = jQuery.urldecode(tmp[1]); + if (key in result) + result[key].push(value); + else + result[key] = [value]; + } + return result; +}; + +/** + * highlight a given string on a jquery object by wrapping it in + * span elements with the given class name. + */ +jQuery.fn.highlightText = function(text, className) { + function highlight(node, addItems) { + if (node.nodeType === 3) { + var val = node.nodeValue; + var pos = val.toLowerCase().indexOf(text); + if (pos >= 0 && + !jQuery(node.parentNode).hasClass(className) && + !jQuery(node.parentNode).hasClass("nohighlight")) { + var span; + var isInSVG = jQuery(node).closest("body, svg, foreignObject").is("svg"); + if (isInSVG) { + span = document.createElementNS("http://www.w3.org/2000/svg", "tspan"); + } else { + span = document.createElement("span"); + span.className = className; + } + span.appendChild(document.createTextNode(val.substr(pos, text.length))); + node.parentNode.insertBefore(span, node.parentNode.insertBefore( + document.createTextNode(val.substr(pos + text.length)), + node.nextSibling)); + node.nodeValue = val.substr(0, pos); + if (isInSVG) { + var rect = document.createElementNS("http://www.w3.org/2000/svg", "rect"); + var bbox = node.parentElement.getBBox(); + rect.x.baseVal.value = bbox.x; + rect.y.baseVal.value = bbox.y; + rect.width.baseVal.value = bbox.width; + rect.height.baseVal.value = bbox.height; + rect.setAttribute('class', className); + addItems.push({ + "parent": node.parentNode, + "target": rect}); + } + } + } + else if (!jQuery(node).is("button, select, textarea")) { + jQuery.each(node.childNodes, function() { + highlight(this, addItems); + }); + } + } + var addItems = []; + var result = this.each(function() { + highlight(this, addItems); + }); + for (var i = 0; i < addItems.length; ++i) { + jQuery(addItems[i].parent).before(addItems[i].target); + } + return result; +}; + +/* + * backward compatibility for jQuery.browser + * This will be supported until firefox bug is fixed. + */ +if (!jQuery.browser) { + jQuery.uaMatch = function(ua) { + ua = ua.toLowerCase(); + + var match = /(chrome)[ \/]([\w.]+)/.exec(ua) || + /(webkit)[ \/]([\w.]+)/.exec(ua) || + /(opera)(?:.*version|)[ \/]([\w.]+)/.exec(ua) || + /(msie) ([\w.]+)/.exec(ua) || + ua.indexOf("compatible") < 0 && /(mozilla)(?:.*? rv:([\w.]+)|)/.exec(ua) || + []; + + return { + browser: match[ 1 ] || "", + version: match[ 2 ] || "0" + }; + }; + jQuery.browser = {}; + jQuery.browser[jQuery.uaMatch(navigator.userAgent).browser] = true; +} diff --git a/_static/basic.css b/_static/basic.css new file mode 100644 index 00000000..f316efcb --- /dev/null +++ b/_static/basic.css @@ -0,0 +1,925 @@ +/* + * basic.css + * ~~~~~~~~~ + * + * Sphinx stylesheet -- basic theme. + * + * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS. + * :license: BSD, see LICENSE for details. + * + */ + +/* -- main layout ----------------------------------------------------------- */ + +div.clearer { + clear: both; +} + +div.section::after { + display: block; + content: ''; + clear: left; +} + +/* -- relbar ---------------------------------------------------------------- */ + +div.related { + width: 100%; + font-size: 90%; +} + +div.related h3 { + display: none; +} + +div.related ul { + margin: 0; + padding: 0 0 0 10px; + list-style: none; +} + +div.related li { + display: inline; +} + +div.related li.right { + float: right; + margin-right: 5px; +} + +/* -- sidebar --------------------------------------------------------------- */ + +div.sphinxsidebarwrapper { + padding: 10px 5px 0 10px; +} + +div.sphinxsidebar { + float: left; + width: 230px; + margin-left: -100%; + font-size: 90%; + word-wrap: break-word; + overflow-wrap : break-word; +} + +div.sphinxsidebar ul { + list-style: none; +} + +div.sphinxsidebar ul ul, +div.sphinxsidebar ul.want-points { + margin-left: 20px; + list-style: square; +} + +div.sphinxsidebar ul ul { + margin-top: 0; + margin-bottom: 0; +} + +div.sphinxsidebar form { + margin-top: 10px; +} + +div.sphinxsidebar input { + border: 1px solid #98dbcc; + font-family: sans-serif; + font-size: 1em; +} + +div.sphinxsidebar #searchbox form.search { + overflow: hidden; +} + +div.sphinxsidebar #searchbox input[type="text"] { + float: left; + width: 80%; + padding: 0.25em; + box-sizing: border-box; +} + +div.sphinxsidebar #searchbox input[type="submit"] { + float: left; + width: 20%; + border-left: none; + padding: 0.25em; + box-sizing: border-box; +} + + +img { + border: 0; + max-width: 100%; +} + +/* -- search page ----------------------------------------------------------- */ + +ul.search { + margin: 10px 0 0 20px; + padding: 0; +} + +ul.search li { + padding: 5px 0 5px 20px; + background-image: url(file.png); + background-repeat: no-repeat; + background-position: 0 7px; +} + +ul.search li a { + font-weight: bold; +} + +ul.search li p.context { + color: #888; + margin: 2px 0 0 30px; + text-align: left; +} + +ul.keywordmatches li.goodmatch a { + font-weight: bold; +} + +/* -- index page ------------------------------------------------------------ */ + +table.contentstable { + width: 90%; + margin-left: auto; + margin-right: auto; +} + +table.contentstable p.biglink { + line-height: 150%; +} + +a.biglink { + font-size: 1.3em; +} + +span.linkdescr { + font-style: italic; + padding-top: 5px; + font-size: 90%; +} + +/* -- general index --------------------------------------------------------- */ + +table.indextable { + width: 100%; +} + +table.indextable td { + text-align: left; + vertical-align: top; +} + +table.indextable ul { + margin-top: 0; + margin-bottom: 0; + list-style-type: none; +} + +table.indextable > tbody > tr > td > ul { + padding-left: 0em; +} + +table.indextable tr.pcap { + height: 10px; +} + +table.indextable tr.cap { + margin-top: 10px; + background-color: #f2f2f2; +} + +img.toggler { + margin-right: 3px; + margin-top: 3px; + cursor: pointer; +} + +div.modindex-jumpbox { + border-top: 1px solid #ddd; + border-bottom: 1px solid #ddd; + margin: 1em 0 1em 0; + padding: 0.4em; +} + +div.genindex-jumpbox { + border-top: 1px solid #ddd; + border-bottom: 1px solid #ddd; + margin: 1em 0 1em 0; + padding: 0.4em; +} + +/* -- domain module index --------------------------------------------------- */ + +table.modindextable td { + padding: 2px; + border-collapse: collapse; +} + +/* -- general body styles --------------------------------------------------- */ + +div.body { + min-width: 360px; + max-width: 800px; +} + +div.body p, div.body dd, div.body li, div.body blockquote { + -moz-hyphens: auto; + -ms-hyphens: auto; + -webkit-hyphens: auto; + hyphens: auto; +} + +a.headerlink { + visibility: hidden; +} + +a:visited { + color: #551A8B; +} + +h1:hover > a.headerlink, +h2:hover > a.headerlink, +h3:hover > a.headerlink, +h4:hover > a.headerlink, +h5:hover > a.headerlink, +h6:hover > a.headerlink, +dt:hover > a.headerlink, +caption:hover > a.headerlink, +p.caption:hover > a.headerlink, +div.code-block-caption:hover > a.headerlink { + visibility: visible; +} + +div.body p.caption { + text-align: inherit; +} + +div.body td { + text-align: left; +} + +.first { + margin-top: 0 !important; +} + +p.rubric { + margin-top: 30px; + font-weight: bold; +} + +img.align-left, figure.align-left, .figure.align-left, object.align-left { + clear: left; + float: left; + margin-right: 1em; +} + +img.align-right, figure.align-right, .figure.align-right, object.align-right { + clear: right; + float: right; + margin-left: 1em; +} + +img.align-center, figure.align-center, .figure.align-center, object.align-center { + display: block; + margin-left: auto; + margin-right: auto; +} + +img.align-default, figure.align-default, .figure.align-default { + display: block; + margin-left: auto; + margin-right: auto; +} + +.align-left { + text-align: left; +} + +.align-center { + text-align: center; +} + +.align-default { + text-align: center; +} + +.align-right { + text-align: right; +} + +/* -- sidebars -------------------------------------------------------------- */ + +div.sidebar, +aside.sidebar { + margin: 0 0 0.5em 1em; + border: 1px solid #ddb; + padding: 7px; + background-color: #ffe; + width: 40%; + float: right; + clear: right; + overflow-x: auto; +} + +p.sidebar-title { + font-weight: bold; +} + +nav.contents, +aside.topic, +div.admonition, div.topic, blockquote { + clear: left; +} + +/* -- topics ---------------------------------------------------------------- */ + +nav.contents, +aside.topic, +div.topic { + border: 1px solid #ccc; + padding: 7px; + margin: 10px 0 10px 0; +} + +p.topic-title { + font-size: 1.1em; + font-weight: bold; + margin-top: 10px; +} + +/* -- admonitions ----------------------------------------------------------- */ + +div.admonition { + margin-top: 10px; + margin-bottom: 10px; + padding: 7px; +} + +div.admonition dt { + font-weight: bold; +} + +p.admonition-title { + margin: 0px 10px 5px 0px; + font-weight: bold; +} + +div.body p.centered { + text-align: center; + margin-top: 25px; +} + +/* -- content of sidebars/topics/admonitions -------------------------------- */ + +div.sidebar > :last-child, +aside.sidebar > :last-child, +nav.contents > :last-child, +aside.topic > :last-child, +div.topic > :last-child, +div.admonition > :last-child { + margin-bottom: 0; +} + +div.sidebar::after, +aside.sidebar::after, +nav.contents::after, +aside.topic::after, +div.topic::after, +div.admonition::after, +blockquote::after { + display: block; + content: ''; + clear: both; +} + +/* -- tables ---------------------------------------------------------------- */ + +table.docutils { + margin-top: 10px; + margin-bottom: 10px; + border: 0; + border-collapse: collapse; +} + +table.align-center { + margin-left: auto; + margin-right: auto; +} + +table.align-default { + margin-left: auto; + margin-right: auto; +} + +table caption span.caption-number { + font-style: italic; +} + +table caption span.caption-text { +} + +table.docutils td, table.docutils th { + padding: 1px 8px 1px 5px; + border-top: 0; + border-left: 0; + border-right: 0; + border-bottom: 1px solid #aaa; +} + +th { + text-align: left; + padding-right: 5px; +} + +table.citation { + border-left: solid 1px gray; + margin-left: 1px; +} + +table.citation td { + border-bottom: none; +} + +th > :first-child, +td > :first-child { + margin-top: 0px; +} + +th > :last-child, +td > :last-child { + margin-bottom: 0px; +} + +/* -- figures --------------------------------------------------------------- */ + +div.figure, figure { + margin: 0.5em; + padding: 0.5em; +} + +div.figure p.caption, figcaption { + padding: 0.3em; +} + +div.figure p.caption span.caption-number, +figcaption span.caption-number { + font-style: italic; +} + +div.figure p.caption span.caption-text, +figcaption span.caption-text { +} + +/* -- field list styles ----------------------------------------------------- */ + +table.field-list td, table.field-list th { + border: 0 !important; +} + +.field-list ul { + margin: 0; + padding-left: 1em; +} + +.field-list p { + margin: 0; +} + +.field-name { + -moz-hyphens: manual; + -ms-hyphens: manual; + -webkit-hyphens: manual; + hyphens: manual; +} + +/* -- hlist styles ---------------------------------------------------------- */ + +table.hlist { + margin: 1em 0; +} + +table.hlist td { + vertical-align: top; +} + +/* -- object description styles --------------------------------------------- */ + +.sig { + font-family: 'Consolas', 'Menlo', 'DejaVu Sans Mono', 'Bitstream Vera Sans Mono', monospace; +} + +.sig-name, code.descname { + background-color: transparent; + font-weight: bold; +} + +.sig-name { + font-size: 1.1em; +} + +code.descname { + font-size: 1.2em; +} + +.sig-prename, code.descclassname { + background-color: transparent; +} + +.optional { + font-size: 1.3em; +} + +.sig-paren { + font-size: larger; +} + +.sig-param.n { + font-style: italic; +} + +/* C++ specific styling */ + +.sig-inline.c-texpr, +.sig-inline.cpp-texpr { + font-family: unset; +} + +.sig.c .k, .sig.c .kt, +.sig.cpp .k, .sig.cpp .kt { + color: #0033B3; +} + +.sig.c .m, +.sig.cpp .m { + color: #1750EB; +} + +.sig.c .s, .sig.c .sc, +.sig.cpp .s, .sig.cpp .sc { + color: #067D17; +} + + +/* -- other body styles ----------------------------------------------------- */ + +ol.arabic { + list-style: decimal; +} + +ol.loweralpha { + list-style: lower-alpha; +} + +ol.upperalpha { + list-style: upper-alpha; +} + +ol.lowerroman { + list-style: lower-roman; +} + +ol.upperroman { + list-style: upper-roman; +} + +:not(li) > ol > li:first-child > :first-child, +:not(li) > ul > li:first-child > :first-child { + margin-top: 0px; +} + +:not(li) > ol > li:last-child > :last-child, +:not(li) > ul > li:last-child > :last-child { + margin-bottom: 0px; +} + +ol.simple ol p, +ol.simple ul p, +ul.simple ol p, +ul.simple ul p { + margin-top: 0; +} + +ol.simple > li:not(:first-child) > p, +ul.simple > li:not(:first-child) > p { + margin-top: 0; +} + +ol.simple p, +ul.simple p { + margin-bottom: 0; +} + +aside.footnote > span, +div.citation > span { + float: left; +} +aside.footnote > span:last-of-type, +div.citation > span:last-of-type { + padding-right: 0.5em; +} +aside.footnote > p { + margin-left: 2em; +} +div.citation > p { + margin-left: 4em; +} +aside.footnote > p:last-of-type, +div.citation > p:last-of-type { + margin-bottom: 0em; +} +aside.footnote > p:last-of-type:after, +div.citation > p:last-of-type:after { + content: ""; + clear: both; +} + +dl.field-list { + display: grid; + grid-template-columns: fit-content(30%) auto; +} + +dl.field-list > dt { + font-weight: bold; + word-break: break-word; + padding-left: 0.5em; + padding-right: 5px; +} + +dl.field-list > dd { + padding-left: 0.5em; + margin-top: 0em; + margin-left: 0em; + margin-bottom: 0em; +} + +dl { + margin-bottom: 15px; +} + +dd > :first-child { + margin-top: 0px; +} + +dd ul, dd table { + margin-bottom: 10px; +} + +dd { + margin-top: 3px; + margin-bottom: 10px; + margin-left: 30px; +} + +.sig dd { + margin-top: 0px; + margin-bottom: 0px; +} + +.sig dl { + margin-top: 0px; + margin-bottom: 0px; +} + +dl > dd:last-child, +dl > dd:last-child > :last-child { + margin-bottom: 0; +} + +dt:target, span.highlighted { + background-color: #fbe54e; +} + +rect.highlighted { + fill: #fbe54e; +} + +dl.glossary dt { + font-weight: bold; + font-size: 1.1em; +} + +.versionmodified { + font-style: italic; +} + +.system-message { + background-color: #fda; + padding: 5px; + border: 3px solid red; +} + +.footnote:target { + background-color: #ffa; +} + +.line-block { + display: block; + margin-top: 1em; + margin-bottom: 1em; +} + +.line-block .line-block { + margin-top: 0; + margin-bottom: 0; + margin-left: 1.5em; +} + +.guilabel, .menuselection { + font-family: sans-serif; +} + +.accelerator { + text-decoration: underline; +} + +.classifier { + font-style: oblique; +} + +.classifier:before { + font-style: normal; + margin: 0 0.5em; + content: ":"; + display: inline-block; +} + +abbr, acronym { + border-bottom: dotted 1px; + cursor: help; +} + +.translated { + background-color: rgba(207, 255, 207, 0.2) +} + +.untranslated { + background-color: rgba(255, 207, 207, 0.2) +} + +/* -- code displays --------------------------------------------------------- */ + +pre { + overflow: auto; + overflow-y: hidden; /* fixes display issues on Chrome browsers */ +} + +pre, div[class*="highlight-"] { + clear: both; +} + +span.pre { + -moz-hyphens: none; + -ms-hyphens: none; + -webkit-hyphens: none; + hyphens: none; + white-space: nowrap; +} + +div[class*="highlight-"] { + margin: 1em 0; +} + +td.linenos pre { + border: 0; + background-color: transparent; + color: #aaa; +} + +table.highlighttable { + display: block; 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+ +/** + * Simple result scoring code. + */ +if (typeof Scorer === "undefined") { + var Scorer = { + // Implement the following function to further tweak the score for each result + // The function takes a result array [docname, title, anchor, descr, score, filename] + // and returns the new score. + /* + score: result => { + const [docname, title, anchor, descr, score, filename] = result + return score + }, + */ + + // query matches the full name of an object + objNameMatch: 11, + // or matches in the last dotted part of the object name + objPartialMatch: 6, + // Additive scores depending on the priority of the object + objPrio: { + 0: 15, // used to be importantResults + 1: 5, // used to be objectResults + 2: -5, // used to be unimportantResults + }, + // Used when the priority is not in the mapping. + objPrioDefault: 0, + + // query found in title + title: 15, + partialTitle: 7, + // query found in terms + term: 5, + partialTerm: 2, + }; +} + +const _removeChildren = (element) => { + while (element && element.lastChild) element.removeChild(element.lastChild); +}; + +/** + * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Guide/Regular_Expressions#escaping + */ +const _escapeRegExp = (string) => + string.replace(/[.*+\-?^${}()|[\]\\]/g, "\\$&"); // $& means the whole matched string + +const _displayItem = (item, searchTerms, highlightTerms) => { + const docBuilder = DOCUMENTATION_OPTIONS.BUILDER; + const docFileSuffix = DOCUMENTATION_OPTIONS.FILE_SUFFIX; + const docLinkSuffix = DOCUMENTATION_OPTIONS.LINK_SUFFIX; + const showSearchSummary = DOCUMENTATION_OPTIONS.SHOW_SEARCH_SUMMARY; + const contentRoot = document.documentElement.dataset.content_root; + + const [docName, title, anchor, descr, score, _filename] = item; + + let listItem = document.createElement("li"); + let requestUrl; + let linkUrl; + if (docBuilder === "dirhtml") { + // dirhtml builder + let dirname = docName + "/"; + if (dirname.match(/\/index\/$/)) + dirname = dirname.substring(0, dirname.length - 6); + else if (dirname === "index/") dirname = ""; + requestUrl = contentRoot + dirname; + linkUrl = requestUrl; + } else { + // normal html builders + requestUrl = contentRoot + docName + docFileSuffix; + linkUrl = docName + docLinkSuffix; + } + let linkEl = listItem.appendChild(document.createElement("a")); + linkEl.href = linkUrl + anchor; + linkEl.dataset.score = score; + linkEl.innerHTML = title; + if (descr) { + listItem.appendChild(document.createElement("span")).innerHTML = + " (" + descr + ")"; + // highlight search terms in the description + if (SPHINX_HIGHLIGHT_ENABLED) // set in sphinx_highlight.js + highlightTerms.forEach((term) => _highlightText(listItem, term, "highlighted")); + } + else if (showSearchSummary) + fetch(requestUrl) + .then((responseData) => responseData.text()) + .then((data) => { + if (data) + listItem.appendChild( + Search.makeSearchSummary(data, searchTerms, anchor) + ); + // highlight search terms in the summary + if (SPHINX_HIGHLIGHT_ENABLED) // set in sphinx_highlight.js + highlightTerms.forEach((term) => _highlightText(listItem, term, "highlighted")); + }); + Search.output.appendChild(listItem); +}; +const _finishSearch = (resultCount) => { + Search.stopPulse(); + Search.title.innerText = _("Search Results"); + if (!resultCount) + Search.status.innerText = Documentation.gettext( + "Your search did not match any documents. Please make sure that all words are spelled correctly and that you've selected enough categories." + ); + else + Search.status.innerText = _( + "Search finished, found ${resultCount} page(s) matching the search query." + ).replace('${resultCount}', resultCount); +}; +const _displayNextItem = ( + results, + resultCount, + searchTerms, + highlightTerms, +) => { + // results left, load the summary and display it + // this is intended to be dynamic (don't sub resultsCount) + if (results.length) { + _displayItem(results.pop(), searchTerms, highlightTerms); + setTimeout( + () => _displayNextItem(results, resultCount, searchTerms, highlightTerms), + 5 + ); + } + // search finished, update title and status message + else _finishSearch(resultCount); +}; +// Helper function used by query() to order search results. +// Each input is an array of [docname, title, anchor, descr, score, filename]. +// Order the results by score (in opposite order of appearance, since the +// `_displayNextItem` function uses pop() to retrieve items) and then alphabetically. +const _orderResultsByScoreThenName = (a, b) => { + const leftScore = a[4]; + const rightScore = b[4]; + if (leftScore === rightScore) { + // same score: sort alphabetically + const leftTitle = a[1].toLowerCase(); + const rightTitle = b[1].toLowerCase(); + if (leftTitle === rightTitle) return 0; + return leftTitle > rightTitle ? -1 : 1; // inverted is intentional + } + return leftScore > rightScore ? 1 : -1; +}; + +/** + * Default splitQuery function. Can be overridden in ``sphinx.search`` with a + * custom function per language. + * + * The regular expression works by splitting the string on consecutive characters + * that are not Unicode letters, numbers, underscores, or emoji characters. + * This is the same as ``\W+`` in Python, preserving the surrogate pair area. + */ +if (typeof splitQuery === "undefined") { + var splitQuery = (query) => query + .split(/[^\p{Letter}\p{Number}_\p{Emoji_Presentation}]+/gu) + .filter(term => term) // remove remaining empty strings +} + +/** + * Search Module + */ +const Search = { + _index: null, + _queued_query: null, + _pulse_status: -1, + + htmlToText: (htmlString, anchor) => { + const htmlElement = new DOMParser().parseFromString(htmlString, 'text/html'); + for (const removalQuery of [".headerlink", "script", "style"]) { + htmlElement.querySelectorAll(removalQuery).forEach((el) => { el.remove() }); + } + if (anchor) { + const anchorContent = htmlElement.querySelector(`[role="main"] ${anchor}`); + if (anchorContent) return anchorContent.textContent; + + console.warn( + `Anchored content block not found. Sphinx search tries to obtain it via DOM query '[role=main] ${anchor}'. Check your theme or template.` + ); + } + + // if anchor not specified or not found, fall back to main content + const docContent = htmlElement.querySelector('[role="main"]'); + if (docContent) return docContent.textContent; + + console.warn( + "Content block not found. Sphinx search tries to obtain it via DOM query '[role=main]'. Check your theme or template." + ); + return ""; + }, + + init: () => { + const query = new URLSearchParams(window.location.search).get("q"); + document + .querySelectorAll('input[name="q"]') + .forEach((el) => (el.value = query)); + if (query) Search.performSearch(query); + }, + + loadIndex: (url) => + (document.body.appendChild(document.createElement("script")).src = url), + + setIndex: (index) => { + Search._index = index; + if (Search._queued_query !== null) { + const query = Search._queued_query; + Search._queued_query = null; + Search.query(query); + } + }, + + hasIndex: () => Search._index !== null, + + deferQuery: (query) => (Search._queued_query = query), + + stopPulse: () => (Search._pulse_status = -1), + + startPulse: () => { + if (Search._pulse_status >= 0) return; + + const pulse = () => { + Search._pulse_status = (Search._pulse_status + 1) % 4; + Search.dots.innerText = ".".repeat(Search._pulse_status); + if (Search._pulse_status >= 0) window.setTimeout(pulse, 500); + }; + pulse(); + }, + + /** + * perform a search for something (or wait until index is loaded) + */ + performSearch: (query) => { + // create the required interface elements + const searchText = document.createElement("h2"); + searchText.textContent = _("Searching"); + const searchSummary = document.createElement("p"); + searchSummary.classList.add("search-summary"); + searchSummary.innerText = ""; + const searchList = document.createElement("ul"); + searchList.classList.add("search"); + + const out = document.getElementById("search-results"); + Search.title = out.appendChild(searchText); + Search.dots = Search.title.appendChild(document.createElement("span")); + Search.status = out.appendChild(searchSummary); + Search.output = out.appendChild(searchList); + + const searchProgress = document.getElementById("search-progress"); + // Some themes don't use the search progress node + if (searchProgress) { + searchProgress.innerText = _("Preparing search..."); + } + Search.startPulse(); + + // index already loaded, the browser was quick! + if (Search.hasIndex()) Search.query(query); + else Search.deferQuery(query); + }, + + _parseQuery: (query) => { + // stem the search terms and add them to the correct list + const stemmer = new Stemmer(); + const searchTerms = new Set(); + const excludedTerms = new Set(); + const highlightTerms = new Set(); + const objectTerms = new Set(splitQuery(query.toLowerCase().trim())); + splitQuery(query.trim()).forEach((queryTerm) => { + const queryTermLower = queryTerm.toLowerCase(); + + // maybe skip this "word" + // stopwords array is from language_data.js + if ( + stopwords.indexOf(queryTermLower) !== -1 || + queryTerm.match(/^\d+$/) + ) + return; + + // stem the word + let word = stemmer.stemWord(queryTermLower); + // select the correct list + if (word[0] === "-") excludedTerms.add(word.substr(1)); + else { + searchTerms.add(word); + highlightTerms.add(queryTermLower); + } + }); + + if (SPHINX_HIGHLIGHT_ENABLED) { // set in sphinx_highlight.js + localStorage.setItem("sphinx_highlight_terms", [...highlightTerms].join(" ")) + } + + // console.debug("SEARCH: searching for:"); + // console.info("required: ", [...searchTerms]); + // console.info("excluded: ", [...excludedTerms]); + + return [query, searchTerms, excludedTerms, highlightTerms, objectTerms]; + }, + + /** + * execute search (requires search index to be loaded) + */ + _performSearch: (query, searchTerms, excludedTerms, highlightTerms, objectTerms) => { + const filenames = Search._index.filenames; + const docNames = Search._index.docnames; + const titles = Search._index.titles; + const allTitles = Search._index.alltitles; + const indexEntries = Search._index.indexentries; + + // Collect multiple result groups to be sorted separately and then ordered. + // Each is an array of [docname, title, anchor, descr, score, filename]. + const normalResults = []; + const nonMainIndexResults = []; + + _removeChildren(document.getElementById("search-progress")); + + const queryLower = query.toLowerCase().trim(); + for (const [title, foundTitles] of Object.entries(allTitles)) { + if (title.toLowerCase().trim().includes(queryLower) && (queryLower.length >= title.length/2)) { + for (const [file, id] of foundTitles) { + const score = Math.round(Scorer.title * queryLower.length / title.length); + const boost = titles[file] === title ? 1 : 0; // add a boost for document titles + normalResults.push([ + docNames[file], + titles[file] !== title ? `${titles[file]} > ${title}` : title, + id !== null ? "#" + id : "", + null, + score + boost, + filenames[file], + ]); + } + } + } + + // search for explicit entries in index directives + for (const [entry, foundEntries] of Object.entries(indexEntries)) { + if (entry.includes(queryLower) && (queryLower.length >= entry.length/2)) { + for (const [file, id, isMain] of foundEntries) { + const score = Math.round(100 * queryLower.length / entry.length); + const result = [ + docNames[file], + titles[file], + id ? "#" + id : "", + null, + score, + filenames[file], + ]; + if (isMain) { + normalResults.push(result); + } else { + nonMainIndexResults.push(result); + } + } + } + } + + // lookup as object + objectTerms.forEach((term) => + normalResults.push(...Search.performObjectSearch(term, objectTerms)) + ); + + // lookup as search terms in fulltext + normalResults.push(...Search.performTermsSearch(searchTerms, excludedTerms)); + + // let the scorer override scores with a custom scoring function + if (Scorer.score) { + normalResults.forEach((item) => (item[4] = Scorer.score(item))); + nonMainIndexResults.forEach((item) => (item[4] = Scorer.score(item))); + } + + // Sort each group of results by score and then alphabetically by name. + normalResults.sort(_orderResultsByScoreThenName); + nonMainIndexResults.sort(_orderResultsByScoreThenName); + + // Combine the result groups in (reverse) order. + // Non-main index entries are typically arbitrary cross-references, + // so display them after other results. + let results = [...nonMainIndexResults, ...normalResults]; + + // remove duplicate search results + // note the reversing of results, so that in the case of duplicates, the highest-scoring entry is kept + let seen = new Set(); + results = results.reverse().reduce((acc, result) => { + let resultStr = result.slice(0, 4).concat([result[5]]).map(v => String(v)).join(','); + if (!seen.has(resultStr)) { + acc.push(result); + seen.add(resultStr); + } + return acc; + }, []); + + return results.reverse(); + }, + + query: (query) => { + const [searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms] = Search._parseQuery(query); + const results = Search._performSearch(searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms); + + // for debugging + //Search.lastresults = results.slice(); // a copy + // console.info("search results:", Search.lastresults); + + // print the results + _displayNextItem(results, results.length, searchTerms, highlightTerms); + }, + + /** + * search for object names + */ + performObjectSearch: (object, objectTerms) => { + const filenames = Search._index.filenames; + const docNames = Search._index.docnames; + const objects = Search._index.objects; + const objNames = Search._index.objnames; + const titles = Search._index.titles; + + const results = []; + + const objectSearchCallback = (prefix, match) => { + const name = match[4] + const fullname = (prefix ? prefix + "." : "") + name; + const fullnameLower = fullname.toLowerCase(); + if (fullnameLower.indexOf(object) < 0) return; + + let score = 0; + const parts = fullnameLower.split("."); + + // check for different match types: exact matches of full name or + // "last name" (i.e. last dotted part) + if (fullnameLower === object || parts.slice(-1)[0] === object) + score += Scorer.objNameMatch; + else if (parts.slice(-1)[0].indexOf(object) > -1) + score += Scorer.objPartialMatch; // matches in last name + + const objName = objNames[match[1]][2]; + const title = titles[match[0]]; + + // If more than one term searched for, we require other words to be + // found in the name/title/description + const otherTerms = new Set(objectTerms); + otherTerms.delete(object); + if (otherTerms.size > 0) { + const haystack = `${prefix} ${name} ${objName} ${title}`.toLowerCase(); + if ( + [...otherTerms].some((otherTerm) => haystack.indexOf(otherTerm) < 0) + ) + return; + } + + let anchor = match[3]; + if (anchor === "") anchor = fullname; + else if (anchor === "-") anchor = objNames[match[1]][1] + "-" + fullname; + + const descr = objName + _(", in ") + title; + + // add custom score for some objects according to scorer + if (Scorer.objPrio.hasOwnProperty(match[2])) + score += Scorer.objPrio[match[2]]; + else score += Scorer.objPrioDefault; + + results.push([ + docNames[match[0]], + fullname, + "#" + anchor, + descr, + score, + filenames[match[0]], + ]); + }; + Object.keys(objects).forEach((prefix) => + objects[prefix].forEach((array) => + objectSearchCallback(prefix, array) + ) + ); + return results; + }, + + /** + * search for full-text terms in the index + */ + performTermsSearch: (searchTerms, excludedTerms) => { + // prepare search + const terms = Search._index.terms; + const titleTerms = Search._index.titleterms; + const filenames = Search._index.filenames; + const docNames = Search._index.docnames; + const titles = Search._index.titles; + + const scoreMap = new Map(); + const fileMap = new Map(); + + // perform the search on the required terms + searchTerms.forEach((word) => { + const files = []; + const arr = [ + { files: terms[word], score: Scorer.term }, + { files: titleTerms[word], score: Scorer.title }, + ]; + // add support for partial matches + if (word.length > 2) { + const escapedWord = _escapeRegExp(word); + if (!terms.hasOwnProperty(word)) { + Object.keys(terms).forEach((term) => { + if (term.match(escapedWord)) + arr.push({ files: terms[term], score: Scorer.partialTerm }); + }); + } + if (!titleTerms.hasOwnProperty(word)) { + Object.keys(titleTerms).forEach((term) => { + if (term.match(escapedWord)) + arr.push({ files: titleTerms[term], score: Scorer.partialTitle }); + }); + } + } + + // no match but word was a required one + if (arr.every((record) => record.files === undefined)) return; + + // found search word in contents + arr.forEach((record) => { + if (record.files === undefined) return; + + let recordFiles = record.files; + if (recordFiles.length === undefined) recordFiles = [recordFiles]; + files.push(...recordFiles); + + // set score for the word in each file + recordFiles.forEach((file) => { + if (!scoreMap.has(file)) scoreMap.set(file, {}); + scoreMap.get(file)[word] = record.score; + }); + }); + + // create the mapping + files.forEach((file) => { + if (!fileMap.has(file)) fileMap.set(file, [word]); + else if (fileMap.get(file).indexOf(word) === -1) fileMap.get(file).push(word); + }); + }); + + // now check if the files don't contain excluded terms + const results = []; + for (const [file, wordList] of fileMap) { + // check if all requirements are matched + + // as search terms with length < 3 are discarded + const filteredTermCount = [...searchTerms].filter( + (term) => term.length > 2 + ).length; + if ( + wordList.length !== searchTerms.size && + wordList.length !== filteredTermCount + ) + continue; + + // ensure that none of the excluded terms is in the search result + if ( + [...excludedTerms].some( + (term) => + terms[term] === file || + titleTerms[term] === file || + (terms[term] || []).includes(file) || + (titleTerms[term] || []).includes(file) + ) + ) + break; + + // select one (max) score for the file. + const score = Math.max(...wordList.map((w) => scoreMap.get(file)[w])); + // add result to the result list + results.push([ + docNames[file], + titles[file], + "", + null, + score, + filenames[file], + ]); + } + return results; + }, + + /** + * helper function to return a node containing the + * search summary for a given text. keywords is a list + * of stemmed words. + */ + makeSearchSummary: (htmlText, keywords, anchor) => { + const text = Search.htmlToText(htmlText, anchor); + if (text === "") return null; + + const textLower = text.toLowerCase(); + const actualStartPosition = [...keywords] + .map((k) => textLower.indexOf(k.toLowerCase())) + .filter((i) => i > -1) + .slice(-1)[0]; + const startWithContext = Math.max(actualStartPosition - 120, 0); + + const top = startWithContext === 0 ? "" : "..."; + const tail = startWithContext + 240 < text.length ? "..." : ""; + + let summary = document.createElement("p"); + summary.classList.add("context"); + summary.textContent = top + text.substr(startWithContext, 240).trim() + tail; + + return summary; + }, +}; + +_ready(Search.init); diff --git a/_static/sphinx_highlight.js b/_static/sphinx_highlight.js new file mode 100644 index 00000000..8a96c69a --- /dev/null +++ b/_static/sphinx_highlight.js @@ -0,0 +1,154 @@ +/* Highlighting utilities for Sphinx HTML documentation. */ +"use strict"; + +const SPHINX_HIGHLIGHT_ENABLED = true + +/** + * highlight a given string on a node by wrapping it in + * span elements with the given class name. + */ +const _highlight = (node, addItems, text, className) => { + if (node.nodeType === Node.TEXT_NODE) { + const val = node.nodeValue; + const parent = node.parentNode; + const pos = val.toLowerCase().indexOf(text); + if ( + pos >= 0 && + !parent.classList.contains(className) && + !parent.classList.contains("nohighlight") + ) { + let span; + + const closestNode = parent.closest("body, svg, foreignObject"); + const isInSVG = closestNode && closestNode.matches("svg"); + if (isInSVG) { + span = document.createElementNS("http://www.w3.org/2000/svg", "tspan"); + } else { + span = document.createElement("span"); + span.classList.add(className); + } + + span.appendChild(document.createTextNode(val.substr(pos, text.length))); + const rest = document.createTextNode(val.substr(pos + text.length)); + parent.insertBefore( + span, + parent.insertBefore( + rest, + node.nextSibling + ) + ); + node.nodeValue = val.substr(0, pos); + /* There may be more occurrences of search term in this node. So call this + * function recursively on the remaining fragment. + */ + _highlight(rest, addItems, text, className); + + if (isInSVG) { + const rect = document.createElementNS( + "http://www.w3.org/2000/svg", + "rect" + ); + const bbox = parent.getBBox(); + rect.x.baseVal.value = bbox.x; + rect.y.baseVal.value = bbox.y; + rect.width.baseVal.value = bbox.width; + rect.height.baseVal.value = bbox.height; + rect.setAttribute("class", className); + addItems.push({ parent: parent, target: rect }); + } + } + } else if (node.matches && !node.matches("button, select, textarea")) { + node.childNodes.forEach((el) => _highlight(el, addItems, text, className)); + } +}; +const _highlightText = (thisNode, text, className) => { + let addItems = []; + _highlight(thisNode, addItems, text, className); + addItems.forEach((obj) => + obj.parent.insertAdjacentElement("beforebegin", obj.target) + ); +}; + +/** + * Small JavaScript module for the documentation. + */ +const SphinxHighlight = { + + /** + * highlight the search words provided in localstorage in the text + */ + highlightSearchWords: () => { + if (!SPHINX_HIGHLIGHT_ENABLED) return; // bail if no highlight + + // get and clear terms from localstorage + const url = new URL(window.location); + const highlight = + localStorage.getItem("sphinx_highlight_terms") + || url.searchParams.get("highlight") + || ""; + localStorage.removeItem("sphinx_highlight_terms") + url.searchParams.delete("highlight"); + window.history.replaceState({}, "", url); + + // get individual terms from highlight string + const terms = highlight.toLowerCase().split(/\s+/).filter(x => x); + if (terms.length === 0) return; // nothing to do + + // There should never be more than one element matching "div.body" + const divBody = document.querySelectorAll("div.body"); + const body = divBody.length ? divBody[0] : document.querySelector("body"); + window.setTimeout(() => { + terms.forEach((term) => _highlightText(body, term, "highlighted")); + }, 10); + + const searchBox = document.getElementById("searchbox"); + if (searchBox === null) return; + searchBox.appendChild( + document + .createRange() + .createContextualFragment( + '

' + + '' + + _("Hide Search Matches") + + "

" + ) + ); + }, + + /** + * helper function to hide the search marks again + */ + hideSearchWords: () => { + document + .querySelectorAll("#searchbox .highlight-link") + .forEach((el) => el.remove()); + document + .querySelectorAll("span.highlighted") + .forEach((el) => el.classList.remove("highlighted")); + localStorage.removeItem("sphinx_highlight_terms") + }, + + initEscapeListener: () => { + // only install a listener if it is really needed + if (!DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS) return; + + document.addEventListener("keydown", (event) => { + // bail for input elements + if (BLACKLISTED_KEY_CONTROL_ELEMENTS.has(document.activeElement.tagName)) return; + // bail with special keys + if (event.shiftKey || event.altKey || event.ctrlKey || event.metaKey) return; + if (DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS && (event.key === "Escape")) { + SphinxHighlight.hideSearchWords(); + event.preventDefault(); + } + }); + }, +}; + +_ready(() => { + /* Do not call highlightSearchWords() when we are on the search page. + * It will highlight words from the *previous* search query. + */ + if (typeof Search === "undefined") SphinxHighlight.highlightSearchWords(); + SphinxHighlight.initEscapeListener(); +}); diff --git a/about.html b/about.html new file mode 100644 index 00000000..e6735028 --- /dev/null +++ b/about.html @@ -0,0 +1,119 @@ + + + + + + + About this code — Balmorel 5.0 documentation + + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

About this code

+

This documentation is under construction

+
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/addons.html b/addons.html new file mode 100644 index 00000000..bd9527c7 --- /dev/null +++ b/addons.html @@ -0,0 +1,125 @@ + + + + + + + Addons — Balmorel 5.0 documentation + + + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

Addons

+

Addons are modular additions to the Balmorel framework that can be turned on and off in the balopt.opt file. E.g., the hydrogen addon adds energy balance equations for hydrogen, demand for hydrogen, hydrogen conversion, transmission and storage technologies etc.

+
+
+
+ + +
+
+ +
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+ + + + \ No newline at end of file diff --git a/genindex.html b/genindex.html new file mode 100644 index 00000000..ebb64751 --- /dev/null +++ b/genindex.html @@ -0,0 +1,116 @@ + + + + + + Index — Balmorel 5.0 documentation + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+
    +
    • +
  • Index
    • +
  • +
    • +
+
+
+
+
+ + +

Index

+ +
+ +
+ + +
+
+
+ +
+ +
+

© Copyright 2024, Mathias Berg Rosendal.

+
+ + Built with Sphinx using a + theme + provided by Read the Docs. + + +
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+
+
+
+ + + + \ No newline at end of file diff --git a/get_started.html b/get_started.html new file mode 100644 index 00000000..55df2856 --- /dev/null +++ b/get_started.html @@ -0,0 +1,137 @@ + + + + + + + Get Started — Balmorel 5.0 documentation + + + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
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+ +
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+
+ +
+

Get Started

+

The intention of this tutorial is to teach the user how to install and run Balmorel, using a small test case.

+
+ +
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+ + +
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+ +
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+
+ + + + \ No newline at end of file diff --git a/get_started/installation.html b/get_started/installation.html new file mode 100644 index 00000000..5bc70481 --- /dev/null +++ b/get_started/installation.html @@ -0,0 +1,149 @@ + + + + + + + Installation — Balmorel 5.0 documentation + + + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
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+ +
+
+
+
+ +
+

Installation

+

A GAMS installation and license is required to run Balmorel. We also recommend installing git to do version control on your Balmorel project.

+

A small demo can be run without a GAMS license in the balmorel-demo branch.

+
+

Downloading Balmorel Framework and Data

+

The Balmorel framework can be downloaded from GitHub as a .zip file by pressing Code -> Download ZIP. +The corresponding data is in another GitHub repository, and can also be downloaded as a .zip. Place the Balmorel_data folder in Balmorel/base and rename it to “data”.

+

This installation can also be done using git commands in a command line interface:

+
git clone https://github.com/balmorelcommunity/Balmorel.git
+cd Balmorel/base
+git clone https://github.com/balmorelcommunity/Balmorel_data.git
+
+
+

Remember to rename Balmorel_data to data inside Balmorel/base.

+
+

Tip

+

If you use VS Code with git, this specific placing of the data repository Balmorel_data inside the framework repository Balmorel/base folder will enable you to simultaneously keep track of changes to both the Balmorel framework and data in your workspace.

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+
+
+ + +
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+ + + + \ No newline at end of file diff --git a/get_started/outputs.html b/get_started/outputs.html new file mode 100644 index 00000000..21b4cf99 --- /dev/null +++ b/get_started/outputs.html @@ -0,0 +1,135 @@ + + + + + + + Outputs — Balmorel 5.0 documentation + + + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

Outputs

+

The main outputs after a succesful Balmorel execution are all_endofmodel.gdx and MainResults.gdx. all_endofmodel.gdx contains everything, from sets, parameters, decision variablel levels, etc. MainResults.gdx is post-processed outputs that are readable to a human energy system analyst.

+

We recommend the interactive bar plotting tool from the pybalmorel package for quick inspections. You will also find functions for plotting maps of transmission capacities and production profiles. See examples here.

+

The video below gives some tips on typical plots and practical guidance on analysing results using GAMS, excel or python.

+
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+
+
+ + +
+
+ +
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+
+ + + + \ No newline at end of file diff --git a/get_started/running_balmorel.html b/get_started/running_balmorel.html new file mode 100644 index 00000000..f9bb7f3a --- /dev/null +++ b/get_started/running_balmorel.html @@ -0,0 +1,136 @@ + + + + + + + Running Balmorel — Balmorel 5.0 documentation + + + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
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+ +
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+
+ +
+

Running Balmorel

+

To setup Balmorel in GAMS Studio, you can drag and drop the Balmorel.gms into GAMS Studio to create a correctly setup project. It is important to ensure that the working directory is in your/path/to/Balmorel/test_run/model, as illustrated in the Figure below.

+
+How to check the working directory of your GAMS project +
+

Check your working directory by opening View/Project Explorer, and then press the gear icon ⚙️ next to “Balmorel”.

+
+
+

Make sure that Balmorel/test_run/model/Balmorel.gms is the main file and press the green run button ▶️. Balmorel should now optimise model year 2030, 2040, 2050 for Denmark and Norway using the previously specificed timesteps.

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+ + +
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+ + + + \ No newline at end of file diff --git a/get_started/scenario_setup.html b/get_started/scenario_setup.html new file mode 100644 index 00000000..c9bf8b8e --- /dev/null +++ b/get_started/scenario_setup.html @@ -0,0 +1,195 @@ + + + + + + + Scenario Setup — Balmorel 5.0 documentation + + + + + + + + + + + + + + + + + + + + + +
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+
+
+ +
+

Scenario Setup

+

Lets start by learning how to execute Balmorel using a small test scenario. Create a new folder in the level of the base folder, a new data and model folder inside of this and copy and paste the Balmorel.gms and cplex.op4 folder from base/model. If you want to call this scenario “test_run” the folder structure should now look like the following:

+
Balmorel
+├── base
+├── test_run
+│   ├── data 
+│   └── model
+│       ├── cplex.op4
+│       └── Balmorel.gms
+└── simex
+
+
+

This is how to setup different scenarios in Balmorel. The framework will first attempt to look for files in the test_run, and then in the base folder if the required file did not exist. This means you do not have to copy paste all of the data in base/data everytime you make a new scenario, but can simply add the changed data. We will do this below.

+
+

Prepare Scenario Data

+

Lets decrease the temporal and spatial resolution significantly, so Balmorel will solve within one or two minutes and we can verify our setup. We can do this by creating new Y.inc, S.inc, T.inc and C.inc files in test_run/data. In GAMS Studio, press File/New…, find the test_run/data folder and save as type “GAMS Include files (*.inc)”. Copy and paste the contents from each of the snippets below:

+
+

Y.inc

+
SET  Y(YYY) "Years in the simulation"
+/
+2030, 2040, 2050
+/;
+
+
+

This will select model years 2030, 2040 and 2050.

+
+
+

S.inc

+
SET S(SSS)  'Seasons in the simulation'
+/  
+S14
+/; 
+
+
+

This corresponds to selecting week 14 in a year.

+
+
+

T.inc

+
SET T(TTT)  'Time periods within a season in the simulation'
+/
+T001, T005, T009, T013, T017, T021
+/;
+
+
+

This corresponds to selecting hours 00:00, 04:00, 08:00, 12:00, 16:00 and 20:00 on a monday.

+
+
+

C.inc

+
SET C(CCC)  'Countries in the simulation'
+/
+NORWAY
+DENMARK
+/;
+
+
+

This selects countries Norway and Denmark (which consist of respectively 5 and 2 electricity and hydrogen nodes, corresponding to the bidding zones of Norway and Denmark).

+

We are now ready to run Balmorel, see the next page.

+
+
+
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/get_started/structure.html b/get_started/structure.html new file mode 100644 index 00000000..2a7ae97b --- /dev/null +++ b/get_started/structure.html @@ -0,0 +1,151 @@ + + + + + + + Structure — Balmorel 5.0 documentation + + + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

Structure

+

When you clone or download Balmorel from GitHub, you will see the following folder structure:

+
Balmorel
+├── base
+│   ├── addons
+│   ├── auxils
+│   ├── bui
+│   ├── data
+│   ├── documentation
+│   ├── logerror
+│   ├── model
+│   │   ├── cplex.op4
+│   │   ├── balopt.opt
+│   │   └── Balmorel.gms
+│   └── output
+└── simex
+
+
+

For now, it will be sufficient to focus on the base/model folder and the Balmorel.gms, balopt.inc and cplex.op4 files. +It is good practice to keep files in the base folder unchanged, unless you want a consistent change in data (base/data) or in the equations of the addons (base/addons). The addons folder contain modules that can be turned of and on in balopt.inc, Balmorel.gms is the file to execute to run Balmorel and cplex.op4 contain important solver options. We will use these files to execute Balmorel on the next page.

+
+

Warning

+

Do not rename the base folder! The code of Balmorel needs to be able to locate the base/addons and base/data folders or it will generate errors.

+
+
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/index.html b/index.html new file mode 100644 index 00000000..7e89abec --- /dev/null +++ b/index.html @@ -0,0 +1,151 @@ + + + + + + + Balmorel — Balmorel 5.0 documentation + + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

Balmorel

+

Balmorel is an open-source, bottom-up partial equilibrium energy system model[1]. It has traditionally been applied to investigate decarbonisation pathways of sector-coupled energy systems[2], infrastructure[3], renewable fuel production[4] and more. Results and framework has been validated against other open-source models[5] [6].

+

A tutorial on how to get started can be found here.

+
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+
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+
+
+ + + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/objects.inv b/objects.inv new file mode 100644 index 00000000..db2f3bbe --- /dev/null +++ b/objects.inv @@ -0,0 +1,10 @@ +# Sphinx inventory version 2 +# Project: Balmorel +# Version: +# The remainder of this file is compressed using zlib. +xڥSK0%%bnh!>"[ Vx8叺=8O_+PnWU^H絢?U:7͵U5H]+iw֐Ζ2/HDhC+1k)+":ex<`2zc0Aix#guaA $5O`aֆ' 8U߾$;` +_j?VYkv8/"7 +whGW658 )#wh$'6KD3 Lqi#ۀxa&jff=T'Cj/ظn6҅^2Z',Á295\ɲtMh31frJxpߥcP'@ +,i ] +*q > +J*C\Pv1 y-$o8!/qgEZ + + + + + + Pre-Processing — Balmorel 5.0 documentation + + + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

Pre-Processing

+

The data format of Balmorel is .inc-files. There are different approaches to pre-processing, the simplest being creating a new .inc-file through GAMS Studio. xls2gams Can be used to produce .inc-files from excel sheets, and for python we recommend the IncFile class from our pybalmorel package.

+
+
+
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/running_on_hpc.html b/running_on_hpc.html new file mode 100644 index 00000000..40db631b --- /dev/null +++ b/running_on_hpc.html @@ -0,0 +1,134 @@ + + + + + + + Running on HPC — Balmorel 5.0 documentation + + + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

Running on HPC

+

It will probably be necessary to run Balmorel on a high-performance computer (HPC).

+

This section will explain how to do this on the LSF 10 Cluster of the Technical University of Denmark, but the instructions may also be applicable to other Linux-based clusters. Note that obviously only students and employees of DTU can access this specific cluster.

+
+ +
+
+ + +
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+ +
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+
+ + + + \ No newline at end of file diff --git a/running_on_hpc/access.html b/running_on_hpc/access.html new file mode 100644 index 00000000..94b9c6e8 --- /dev/null +++ b/running_on_hpc/access.html @@ -0,0 +1,168 @@ + + + + + + + Accessing the Cluster — Balmorel 5.0 documentation + + + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

Accessing the Cluster

+

A general guide for accessing the DTU clusters through the so-called login nodes can be found here. We go through examples using PuTTY for accessing these nodes below.

+

Note that you should not transfer large files via the login nodes (e.g. login.gbar.dtu.dk), but through the transfer nodes (e.g. transfer.gbar.dtu.dk). A general guide exists for transferring files to and from the cluster, and we provided an example of how to access the transfer node using WinSCP below.

+
+

Warning

+
    +

  • Remember to be on a DTU network, either by physically being at DTU or through a VPN, such as Cisco VPN.

    • +

  • Do not transfer large files or run resource intensive programs directly on the login nodes!
    +See WinSCP Example for how to transfer large files and Job Submission for submitting resource intensive programs.

    • +
+
+
+

PuTTY Example

+

We will use PuTTY to explain how to submit jobs. When starting PuTTY, a graphical user interface (GUI) appears as illustrated in the Figure below.

+
+Logging into PuTTY +
+

The graphical user interface that appears when starting up PuTTY.

+
+
+

Type login.gbar.dtu.dk as the host-name and enter. This results in a command prompt that asks for your username, see the code snippet below. Write your DTU initials or student number. This is followed by a password prompt. Note that it does not show your password as you type it for security purposes, but your keystrokes are being registered. Type your DTU password confidently and press enter. You can also (in Windows) copy your password and paste it into the password prompt with shift + enter (not ctrl + V).

+
+
The prompts appearing after entering the PuTTY setup.
+
login as: user_name
+user_name@login.gbar.dtu.dk's password:
+
+
+
+
+
+

WinSCP Example

+

When you open WinSCP, the GUI illustrated in the Figure below will appear. Type your user name followed by @transfer.gbar.dtu.dk in the “Host name” form and press enter. Once again, you will need to write your DTU password. You will then enter the main WinSCP GUI, where you can browse local files in the left window and HPC files in the right window. Files can be transferred by dragging and dropping between the two systems.

+
+Logging into PuTTY +
+

The graphical user interface that appears when starting up WinSCP.

+
+
+
+
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/running_on_hpc/installation.html b/running_on_hpc/installation.html new file mode 100644 index 00000000..b792f2be --- /dev/null +++ b/running_on_hpc/installation.html @@ -0,0 +1,135 @@ + + + + + + + Installation — Balmorel 5.0 documentation + + + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

Installation

+

We will describe how to transfer files through WinSCP and submit jobs through PuTTY, but it is possible to access the clusters in many ways, such as through Visual Studio Code or ThinLinc.

+
+

Software Requirements

+
    +

  • Download and install WinSCP for transferring files to the HPC.

    • +

  • Download and install PuTTY for submitting jobs.

    • +

  • Download and install Cisco VPN to access DTU network from home.

    • +
+
+
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/running_on_hpc/submitting_a_job.html b/running_on_hpc/submitting_a_job.html new file mode 100644 index 00000000..c6754f6f --- /dev/null +++ b/running_on_hpc/submitting_a_job.html @@ -0,0 +1,183 @@ + + + + + + + Submitting a Job — Balmorel 5.0 documentation + + + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

Submitting a Job

+

We refer to the best practice guide by DTU Computing Center on how to figure out what resources to ask for.

+
+

Warning

+

Remember to study the log report after your job finishes, so you can be more accurate on what resources your job needs in the next submission!

+
+
+

Job Script

+

After having transferred our Balmorel model through WinSCP (see previous page), we want it. We need to submit a job, which means creating a job script that asks for the right amount of memory usage and time before completion. This is done through a job script, illustrated in the code snippet below. We refer to this general guide by DTU Computing Center for the exact explanations of the different elements.

+

Note that the bottom commands assumes that the job script is placed inside your Balmorel folder, and that your Balmorel project contains a “scenario1” scenario - see how to create new scenarios. The --threads=$LSB_DJOB_NUMPROC command makes sure that Balmorel does not use more cores than defined in your job script (four in this case, due to -n 4)

+
#!/bin/sh 
+### General options 
+### -- specify queue -- 
+#BSUB -q hpc
+### -- set the job Name -- 
+#BSUB -J My_Application
+### -- ask for number of cores (default: 1) -- 
+#BSUB -n 4 
+### -- specify that the cores must be on the same host -- 
+#BSUB -R "span[hosts=1]"
+### -- specify that we need 4GB of memory per core/slot -- 
+#BSUB -R "rusage[mem=4GB]"
+### -- specify that we want the job to get killed if it exceeds 5 GB per core/slot -- 
+#BSUB -M 5GB
+### -- set walltime limit: hh:mm -- 
+#BSUB -W 24:00 
+### -- set the email address -- 
+# please uncomment the following line and put in your e-mail address,
+# if you want to receive e-mail notifications on a non-default address
+##BSUB -u your_email_address
+### -- send notification at start -- 
+#BSUB -B 
+### -- send notification at completion -- 
+#BSUB -N 
+### -- Specify the output and error file. %J is the job-id -- 
+### -- -o and -e mean append, -oo and -eo mean overwrite -- 
+#BSUB -o Output_%J.out 
+#BSUB -e Output_%J.err 
+
+# Go to model folder of your scenario - this assumes that the job script is at the same level of the Balmorel folder
+cd scenario1/model 
+# Run Balmorel
+gams Balmorel --threads=$LSB_DJOB_NUMPROC
+
+
+
+
+

Submitting the Job in PuTTY

+

Log in to PuTTY, change directory to inside your Balmorel folder (i.e. the cd command below), and submit the job that we created above using the bsub command. This assumes that you saved the job script as “job_script.sh”.

+
cd path/to/Balmorel
+bsub < job_script.sh
+
+
+
+
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/search.html b/search.html new file mode 100644 index 00000000..571ebc51 --- /dev/null +++ b/search.html @@ -0,0 +1,131 @@ + + + + + + Search — Balmorel 5.0 documentation + + + + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+
    +
    • +
  • Search
    • +
  • +
    • +
+
+
+
+
+ + + + +
+ +
+ +
+
+
+ +
+ +
+

© Copyright 2024, Mathias Berg Rosendal.

+
+ + Built with Sphinx using a + theme + provided by Read the Docs. + + +
+
+
+
+
+ + + + + + + + + \ No newline at end of file diff --git a/searchindex.js b/searchindex.js new file mode 100644 index 00000000..af0384a7 --- /dev/null +++ b/searchindex.js @@ -0,0 +1 @@ +Search.setIndex({"alltitles": {"About this code": [[0, null]], "Accessing the Cluster": [[11, null]], "Addons": [[1, null]], "Balmorel": [[8, null]], "C.inc": [[6, "c-inc"]], "Downloading Balmorel Framework and Data": [[3, "downloading-balmorel-framework-and-data"]], "Get Started": [[2, null]], "Installation": [[3, null], [12, null]], "Job Script": [[13, "job-script"]], "Outputs": [[4, null]], "Pre-Processing": [[9, null]], "Prepare Scenario Data": [[6, "prepare-scenario-data"]], "PuTTY Example": [[11, "putty-example"]], "Running Balmorel": [[5, null]], "Running on HPC": [[10, null]], "S.inc": [[6, "s-inc"]], "Scenario Setup": [[6, null]], "Software Requirements": [[12, null]], "Structure": [[7, null]], "Submitting a Job": [[13, null]], "Submitting the Job in PuTTY": [[13, "submitting-the-job-in-putty"]], "T.inc": [[6, "t-inc"]], "WinSCP Example": [[11, "winscp-example"]], "Y.inc": [[6, "y-inc"]]}, "docnames": ["about", "addons", "get_started", "get_started/installation", "get_started/outputs", "get_started/running_balmorel", "get_started/scenario_setup", "get_started/structure", "index", "pre_processing", "running_on_hpc", "running_on_hpc/access", "running_on_hpc/installation", "running_on_hpc/submitting_a_job"], "envversion": {"sphinx": 62, "sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2}, "filenames": ["about.md", "addons.md", "get_started.md", "get_started/installation.md", "get_started/outputs.md", "get_started/running_balmorel.md", "get_started/scenario_setup.md", "get_started/structure.md", "index.md", "pre_processing.md", 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