Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Linear model and power analysis for both DP feature sets #32

Open
gwaybio opened this issue Jan 20, 2023 · 1 comment
Open

Linear model and power analysis for both DP feature sets #32

gwaybio opened this issue Jan 20, 2023 · 1 comment
Assignees

Comments

@gwaybio
Copy link
Member

gwaybio commented Jan 20, 2023

Currently, we use only one of the DP feature sets for linear modeling and power analysis. We should use both.

It would also be good to clarify what is different between the feature spaces. Are there differences per single cell feature? This might help us to zero in on efficientnet features that are significantly capturing nuclei or cytoplasm!

@jenna-tomkinson
Copy link
Member

This is something that we should have analysis for. The difference in the DP feature sets is what object is used to measure the features. So nuc project uses nuclei objects and cyto project uses whole cell objects.

So essentially this is like CP where there are different objects but there are two different outputs since DP can only run one object at a time.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants