Add a tool to assign series to a PI-RADS MRI type into an SR document

[fedorov]

No description provided.

[fedorov]

functional dcmqi tool in this branch: https://github.com/fedorov/dcmqi/tree/qiicrx

[che85]

slicer.modules.qiicrx-sr is not callable from python scripting.

>>> slicer.modules.qiicrx-sr
Traceback (most recent call last):
  File "<console>", line 1, in <module>
AttributeError: 'module' object has no attribute 'qiicrx'

after renaming it to slicer.modules.qiicrx_sr it works:

>>> slicer.modules.qiicrx_sr
qSlicerCLIModule (qSlicerCLIModule at: 0x7fe72b067350)

@jcfr Are there any such restrictions of not using - in cli module names? The xml-generated 3DSlicer ui works without issues.

[jcfr]

- is forbidden in python identifier names

See https://docs.python.org/2/reference/lexical_analysis.html#identifiers

We could also systematically convert - to _ when doing the module discovery but I suggest to keep things consistent.

https://stackoverflow.com/questions/761519/is-it-ok-to-use-dashes-in-python-files-when-trying-to-import-them

[fedorov]

I anticipated this would cause problems. Let's just rename the converter to qiicrxSR or something like that.

[fedorov]

@che85 there should also be a way to manually assign series type by the operator, in case automatic detection failed. There are different ways automatic assignment can fail - it can assign a wrong category, or it can completely miss certain series. What this means is that there should also be a way to add manually individual series from the study and assign series type.

[che85]

We should talk about how to do that in the user interface.

[fedorov]

I was adding form content in the google doc, and I was thinking perhaps this could be done in the "study assessment" form - check it out here. Let's discuss when you are back.