Skip to content

Latest commit

 

History

History
14 lines (10 loc) · 795 Bytes

TODO.md

File metadata and controls

14 lines (10 loc) · 795 Bytes

nf-artist

nf-artist is a Nextflow pipeline to generate interactive multiplexed image explorations and thumbnails.

  • Add CI testing in Github action using included test data in data/ and samplesheet data/test_samplesheet.csv
  • Move logic on if minerva story or miniature thumbnail are run out of samplesheet and into params

Minerva

  • ✅ Ensure H&E images are rendered with a fixed legend
  • Allow for custom descriptions to be provided in the samplesheet and added into the Minerva story
  • Update to new version of Minerva with channel selection

Miniature

  • Split make_miniature into two processes, one to run the miniature script for multiplexed images and one (that can have lower resource requirements) that makes the brightfield thumbnail for H&E images with TiffSlide