diff --git a/jobs/ICDDRB_Paired_Fastq/job.json b/jobs/ICDDRB_Paired_Fastq/job.json new file mode 100644 index 0000000..2adfccd --- /dev/null +++ b/jobs/ICDDRB_Paired_Fastq/job.json @@ -0,0 +1,101 @@ +{ + "cwl_wf_url": "https://github.com/Sage-Bionetworks-Workflows/dockstore-workflow-rnaseq/tree/v1.1.3", + "cwl_args_url": "https://raw.githubusercontent.com/Sage-Bionetworks-Workflows/dockstore-workflow-rnaseq/v1.1.3/jobs/ICDDRB_Paired_Fastq/job.json", + "index_synapseid": "syn20645801", + "synapse_parentid": "syn23283873", + "nthreads": 15, + "synapse_config": { + "class": "File", + "path": "/etc/synapse/.synapseConfig" + }, + "synapseid": [ + "syn22332896", + "syn22332892", + "syn22332893", + "syn22332887", + "syn22332881", + "syn22332884", + "syn22332868", + "syn22332874", + "syn22332898", + "syn22332875", + "syn22332885", + "syn22332878", + "syn22332870", + "syn22332861", + "syn22332857", + "syn22332858", + "syn22332853", + "syn22332859", + "syn22909743", + "syn22909748", + "syn22909864", + "syn22909875", + "syn22909870", + "syn22909868", + "syn22909670", + "syn22909717", + "syn22909796", + "syn22909823", + "syn22909808", + "syn22909810", + "syn22909822", + "syn22909769", + "syn22909852", + "syn22909771", + "syn22909851", + "syn22909891", + "syn22909880", + "syn22909940", + "syn22909939", + "syn22909895", + "syn22909931", + "syn22909927", + "syn22909930" + ], + "synapseid_2": [ + "syn22332897", + "syn22332877", + "syn22332882", + "syn22332869", + "syn22332890", + "syn22332899", + "syn22332883", + "syn22332895", + "syn22332886", + "syn22332894", + "syn22332876", + "syn22332879", + "syn22332867", + "syn22332856", + "syn22332860", + "syn22332855", + "syn22332854", + "syn22992382", + "syn22909768", + "syn22909760", + "syn22909889", + "syn22909863", + "syn22909878", + "syn22909809", + "syn22909664", + "syn22909883", + "syn22909855", + "syn22909807", + "syn22909724", + "syn22909824", + "syn22909815", + "syn22909757", + "syn22909869", + "syn22909788", + "syn22909762", + "syn22909884", + "syn22909933", + "syn22909941", + "syn22909932", + "syn22909903", + "syn22909929", + "syn22909918", + "syn22909937" + ] +} diff --git a/jobs/ICDDRB_Paired_Fastq/options.json b/jobs/ICDDRB_Paired_Fastq/options.json new file mode 100644 index 0000000..22ba9a7 --- /dev/null +++ b/jobs/ICDDRB_Paired_Fastq/options.json @@ -0,0 +1,17 @@ +{ + "zone": "us-east-1a", + "cluster_name": "rna-seq-reprocessing-scicomp-toil-cluster-v001", + "tmpdir": "/var/lib/toil", + "run_name": "icd", + "log_level": "DEBUG", + "retry_count": "3", + "target_time": "1", + "max_nodes": "25", + "default_disk": "450G", + "node_types": "m5.4xlarge", + "node_storage": "500", + "preemptable_compensation": "0.5", + "rescue_frequency": "9000", + "cwl": "fastq_paired.cwl" +} +