diff --git a/src/ontology/components/vibso_classes.owl b/src/ontology/components/vibso_classes.owl index 82528a3..5c5d0a4 100644 --- a/src/ontology/components/vibso_classes.owl +++ b/src/ontology/components/vibso_classes.owl @@ -24,14 +24,13 @@ Prefix(Wikipedia:=) Ontology( - + Annotation(rdfs:comment "This component is derived from the 'src/templates/vibso_classes.tsv', which is edited manually by domain experts.") Declaration(Class(obo:BFO_0000029)) Declaration(Class(obo:CHMO_0000823)) Declaration(Class(obo:IAO_0000027)) Declaration(Class(obo:IAO_0000032)) -Declaration(Class(obo:IAO_0000109)) Declaration(Class(obo:IAO_0000140)) Declaration(Class(obo:OBI_0000654)) Declaration(Class(obo:OBI_0000968)) @@ -405,13 +404,12 @@ SubClassOf(obo:VIBSO_0000027 obo:IAO_0000140) # Class: obo:VIBSO_0000028 (absorbance) -AnnotationAssertion(Annotation(dc:source ) Annotation(dc:source ) obo:IAO_0000115 obo:VIBSO_0000028 "A meassurement datum that represents the logarithm to the base 10 (linear absorbance) of the incident (prior to absorption) spectral radiant power, divided by the transmitted spectral radiant power."@en) -AnnotationAssertion(obo:IAO_0000118 obo:VIBSO_0000028 "extinction"@en) +AnnotationAssertion(Annotation(dc:source ) Annotation(dc:source ) obo:IAO_0000115 obo:VIBSO_0000028 "A data item that quantifies the absorption quality of a sample by being the logarithm of the incident electromagnetic radiation power (before absorption), divided by the transmitted electromagnetic radiation power (after absorption)."@en) AnnotationAssertion(dc:contributor obo:VIBSO_0000028 ) AnnotationAssertion(rdfs:comment obo:VIBSO_0000028 "Definition was adapted from “afo:absorbance“. We did not reuse/import this AFO term directly due to the associated ontological commitment of AFO. Yet, we will provide a mapping."@en) AnnotationAssertion(rdfs:label obo:VIBSO_0000028 "absorbance"@en) AnnotationAssertion(rdfs:seeAlso obo:VIBSO_0000028 ) -SubClassOf(obo:VIBSO_0000028 obo:IAO_0000109) +SubClassOf(obo:VIBSO_0000028 obo:IAO_0000027) ) diff --git a/src/templates/vibso_classes.tsv b/src/templates/vibso_classes.tsv index 217ca99..932a692 100644 --- a/src/templates/vibso_classes.tsv +++ b/src/templates/vibso_classes.tsv @@ -31,5 +31,10 @@ obo:VIBSO_0000024 point distance Z sampling pace in the Z direction|sampling ste obo:VIBSO_0000025 number of measurements X number of points in the X direction|number of points per line https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32 A setting datum that specifies how many equally configured measurements of a sample are to be performed along the X-axis of a certain region of interest. Together with the point distance X, this setting defines the region of interest width. owl:Class setting datum ORCID:0000-0001-7694-5519|ORCID:0000-0002-2239-3955 50 number of measurements X = (region of interest width) / (point distance X) obo:VIBSO_0000026 number of measurements Y number of points in the Y direction|number of lines per layer https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32 A setting datum that specifies how many equally configured measurements of a sample are to be performed along the Y-axis of a certain region of interest. Together with the point distance Y, this setting defines the region of interest breadth. owl:Class setting datum ORCID:0000-0001-7694-5519|ORCID:0000-0002-2239-3955 100 number of measurements = (region of interest breadth) / (point distance Y) obo:VIBSO_0000027 number of measurements Z number of points in the Z direction|number of layers per acquisition https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32 "A setting datum that specifies how many equally configured measurements of a sample are to be performed in the vertical direction (on the Z-axis) of a certain region of interest. +<<<<<<< HEAD Together with the focal point distance, this setting defines the region of interest depth." owl:Class setting datum ORCID:0000-0001-7694-5519|ORCID:0000-0002-2239-3956 10 number of measurements Z = (region of interest depth) / (point distance Z) obo:VIBSO_0000028 absorbance extinction https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/86 A meassurement datum that represents the logarithm to the base 10 (linear absorbance) of the incident (prior to absorption) spectral radiant power, divided by the transmitted spectral radiant power. https://doi.org/10.1351/goldbook|http://purl.allotrope.org/ontologies/result#AFR_0001157 owl:Class measurement datum ORCID:0000-0002-1595-3213 Definition was adapted from “afo:absorbance“. We did not reuse/import this AFO term directly due to the associated ontological commitment of AFO. Yet, we will provide a mapping. +======= +Together with the focal point distance, this setting defines the region of interest depth." owl:Class setting datum ORCID:0000-0001-7694-5519|ORCID:0000-0002-2239-3956 10 number of measurements Z = (region of interest depth) / (point distance Z) +obo:VIBSO_0000028 absorbance https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/86 A data item that quantifies the absorption quality of a sample by being the logarithm of the incident electromagnetic radiation power (before absorption), divided by the transmitted electromagnetic radiation power (after absorption). https://doi.org/10.1351/goldbook|http://purl.allotrope.org/ontologies/result#AFR_0001157 owl:Class data item| ORCID:0000-0002-1595-3213 Definition was adapted from “afo:absorbance“. We did not reuse/import this AFO term directly due to the associated ontological commitment of AFO. Yet, we will provide a mapping. +>>>>>>> 7d24ea3 (update definition)