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schema: '2.0'
stages:
GetAtoms:
cmd: "python3 -c \"from main import GetAtoms; GetAtoms.load(name='GetAtoms').run_and_save()\"\
\ "
params:
params.yaml:
GetAtoms:
size: 2
outs:
- path: nodes/GetAtoms/outs.json
md5: 6b5a79446c5355a71fa33d4aaed92041
size: 5762
RunMD:
cmd: "python3 -c \"from main import RunMD; RunMD.load(name='RunMD').run_and_save()\"\
\ "
deps:
- path: nodes/GetAtoms/outs.json
md5: 6b5a79446c5355a71fa33d4aaed92041
size: 5762
params:
params.yaml:
RunMD:
dump_interval: 5
steps: 50
temperature: 300
timestep: 1.0
outs:
- path: nodes/RunMD/outs.json
md5: 8d9d8304b0db3e6e6e2742aa5410d676
size: 453978
ComputeRDF:
cmd: "python3 -c \"from main import ComputeRDF; ComputeRDF.load(name='ComputeRDF').run_and_save()\"\
\ "
deps:
- path: nodes/RunMD/outs.json
md5: 8d9d8304b0db3e6e6e2742aa5410d676
size: 453978
params:
params.yaml:
ComputeRDF:
nbins: 500
rmax: 3.6
outs:
- path: nodes/ComputeRDF/nice_plot.csv
md5: 0d6380472e07373b58c72ef9cf55e802
size: 14815
- path: nodes/ComputeRDF/outs.json
md5: 578b43e502f015cf53aeb7ea09553d2f
size: 11207