diff --git a/Pipfile b/Pipfile index e0b631e..2f1e985 100644 --- a/Pipfile +++ b/Pipfile @@ -21,6 +21,7 @@ mypy = "*" pre-commit = "*" pytest = "*" ruff = "*" +timdex-dataset-api = { git = "git+https://github.com/MITLibraries/timdex-dataset-api.git"} vcrpy = "*" [requires] diff --git a/Pipfile.lock b/Pipfile.lock index bb4bf13..4e14ba3 100644 --- a/Pipfile.lock +++ b/Pipfile.lock @@ -1,7 +1,7 @@ { "_meta": { "hash": { - "sha256": "132bfd24963b85bc439bc21fa64e516adec005940084458fa6e47227b556a78f" + "sha256": "8176e687b5af7251c4f33f50f84c49bc06dcbc90c856cdef2fb3f1a74d24ea2f" }, "pipfile-spec": 6, "requires": { @@ -18,148 +18,135 @@ "default": { "boto3": { "hashes": [ - "sha256:18416d07b41e6094101a44f8b881047dcec6b846dad0b9f83b9bbf2f0cd93d07", - "sha256:7f8e8a252458d584d8cf7877c372c4f74ec103356eedf43d2dd9e479f47f3639" + "sha256:516c514fb447d6f216833d06a0781c003fcf43099a4ca2f5a363a8afe0942070", + "sha256:5aa606239f0fe0dca0506e0ad6bbe4c589048e7e6c2486cee5ec22b6aa7ec2f8" ], "index": "pypi", 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], "markers": "python_version >= '3.9'", - "version": "==1.15.5" + "version": "==1.18.3" } } } diff --git a/compose.yaml b/compose.yaml index 6eadbdd..8e658af 100644 --- a/compose.yaml +++ b/compose.yaml @@ -10,6 +10,7 @@ services: - discovery.type=single-node - bootstrap.memory_lock=true - "OPENSEARCH_JAVA_OPTS=-Xms512m -Xmx512m" + - OPENSEARCH_INITIAL_ADMIN_PASSWORD=${OPENSEARCH_INITIAL_ADMIN_PASSWORD} volumes: - opensearch-local-data:/usr/share/opensearch/data networks: @@ -21,6 +22,7 @@ services: environment: - "DISABLE_SECURITY_DASHBOARDS_PLUGIN=true" - 'OPENSEARCH_HOSTS=["http://opensearch:9200"]' + - OPENSEARCH_INITIAL_ADMIN_PASSWORD=${OPENSEARCH_INITIAL_ADMIN_PASSWORD} networks: - opensearch-local-net volumes: diff --git a/tests/conftest.py b/tests/conftest.py index 9fd5cfd..58e6e6f 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -3,6 +3,7 @@ from click.testing import CliRunner from tim.opensearch import configure_opensearch_client +from timdex_dataset_api import TIMDEXDataset EXIT_CODES = { "success": 0, diff --git a/tests/test_cli.py b/tests/test_cli.py index 104c037..e3cb289 100644 --- a/tests/test_cli.py +++ b/tests/test_cli.py @@ -1,8 +1,10 @@ import re +from unittest.mock import MagicMock, patch from freezegun import freeze_time from tim.cli import main +from tim.errors import BulkIndexingError from .conftest import EXIT_CODES, my_vcr @@ -256,3 +258,88 @@ def test_bulk_delete_with_source_success(caplog, runner): "from index 'alma-2022-09-01t00-00-00'" in caplog.text ) assert "Bulk deletion complete!" in caplog.text + + +@patch("timdex_dataset_api.dataset.TIMDEXDataset.load") +@patch("tim.helpers.validate_bulk_cli_options") +@patch("tim.opensearch.bulk_delete") +@patch("tim.opensearch.bulk_index") +def test_bulk_update_with_source_success( + mock_bulk_index, + mock_bulk_delete, + mock_validate_bulk_cli_options, + mock_timdex_dataset, + caplog, + monkeypatch, + runner, +): + monkeypatch.delenv("TIMDEX_OPENSEARCH_ENDPOINT", raising=False) + mock_bulk_index.return_value = { + "created": 1000, + "updated": 0, + "errors": 0, + "total": 1000, + } + mock_bulk_delete.return_value = {"deleted": 0, "errors": 0, "total": 0} + mock_validate_bulk_cli_options.return_value = "alma" + mock_timdex_dataset.return_value = MagicMock() + + result = runner.invoke( + main, + [ + "bulk-update", + "--source", + "alma", + "--run-date", + "2024-12-01", + "--run-id", + "abc123", + "s3://test-timdex-bucket/dataset", + ], + ) + assert result.exit_code == EXIT_CODES["success"] + assert ( + 'Bulk update complete: {"index": {"created": 1000, "updated": 0, "errors": 0, "total": 1000}, "delete": {"deleted": 0, "errors": 0, "total": 0}' + in caplog.text + ) + + +@patch("timdex_dataset_api.dataset.TIMDEXDataset.load") +@patch("tim.helpers.validate_bulk_cli_options") +@patch("tim.opensearch.bulk_delete") +@patch("tim.opensearch.bulk_index") +def test_bulk_update_with_source_raise_bulk_indexing_error( + mock_bulk_index, + mock_bulk_delete, + mock_validate_bulk_cli_options, + mock_timdex_dataset, + caplog, + monkeypatch, + runner, +): + monkeypatch.delenv("TIMDEX_OPENSEARCH_ENDPOINT", raising=False) + mock_bulk_index.side_effect = BulkIndexingError( + record="alma:0", index="index", error="exception" + ) + mock_bulk_delete.return_value = {"deleted": 0, "errors": 0, "total": 0} + mock_validate_bulk_cli_options.return_value = "alma" + mock_timdex_dataset.return_value = MagicMock() + + result = runner.invoke( + main, + [ + "bulk-update", + "--source", + "alma", + "--run-date", + "2024-12-01", + "--run-id", + "abc123", + "s3://test-timdex-bucket/dataset", + ], + ) + assert result.exit_code == EXIT_CODES["success"] + assert ( + 'Bulk update complete: {"index": {"created": 0, "updated": 0, "errors": 0, "total": 0}, "delete": {"deleted": 0, "errors": 0, "total": 0}' + in caplog.text + ) diff --git a/tim/cli.py b/tim/cli.py index 8c0b671..63e15e2 100644 --- a/tim/cli.py +++ b/tim/cli.py @@ -1,13 +1,15 @@ # ruff: noqa: TRY003, EM101 +import json import logging from datetime import timedelta from time import perf_counter import rich_click as click - from tim import errors, helpers from tim import opensearch as tim_os from tim.config import PRIMARY_ALIAS, VALID_SOURCES, configure_logger, configure_sentry +from tim.errors import BulkIndexingError +from timdex_dataset_api import TIMDEXDataset logger = logging.getLogger(__name__) @@ -252,6 +254,7 @@ def promote(ctx: click.Context, index: str, alias: list[str]) -> None: # Bulk record processing commands +# NOTE: FEATURE FLAG: 'bulk_index' may be removed entirely when v2 work done @main.command() @click.option("-i", "--index", help="Name of the index to bulk index records into.") @click.option( @@ -295,6 +298,7 @@ def bulk_index(ctx: click.Context, index: str, source: str, filepath: str) -> No ) +# NOTE: FEATURE FLAG: 'bulk_index' may be removed entirely when v2 work done @main.command() @click.option("-i", "--index", help="Name of the index to bulk delete records from.") @click.option( @@ -334,3 +338,61 @@ def bulk_delete(ctx: click.Context, index: str, source: str, filepath: str) -> N results["deleted"], results["total"], ) + + +@main.command() +@click.option("-i", "--index", help="Name of the index to bulk index records into.") +@click.option( + "-s", + "--source", + type=click.Choice(VALID_SOURCES), + help="Source whose primary-aliased index to bulk index records into.", +) +@click.option("-d", "--run-date", help="Run date, formatted as YYYY-MM-DD.") +@click.option("-rid", "--run-id", help="Run ID.") +@click.argument("dataset_path", type=click.Path()) +@click.pass_context +def bulk_update( + ctx: click.Context, + index: str, + source: str, + run_date: str, + run_id: str, + dataset_path: str, +): + """Bulk update records for an index. + + Must provide either the name of an existing index in the cluster or a valid source. + If source is provided, it will perform indexing and/or deletion of records for + the primary-aliased index for the source. + + The method will read transformed records from a TIMDEXDataset + located at dataset_path using the 'timdex-dataset-api' library. The dataset + is filtered by run date and run ID. + + Logs an error and aborts if the provided index doesn't exist in the cluster. + """ + client = ctx.obj["CLIENT"] + index = helpers.validate_bulk_cli_options(index, source, client) + + logger.info(f"Bulk updating records from dataset '{dataset_path}' into '{index}'") + + index_results = {"created": 0, "updated": 0, "errors": 0, "total": 0} + delete_results = {"deleted": 0, "errors": 0, "total": 0} + + td = TIMDEXDataset(location=dataset_path) + td.load(run_date=run_date, run_id=run_id) + + # bulk index records + records_to_index = td.read_transformed_records_iter(action="index") + try: + index_results.update(tim_os.bulk_index(client, index, records_to_index)) + except BulkIndexingError as exception: + logger.info(f"Bulk indexing failed: {exception}") + + # bulk delete records + records_to_delete = td.read_dicts_iter(columns=["timdex_record_id"], action="delete") + delete_results.update(tim_os.bulk_delete(client, index, records_to_delete)) + + summary_results = {"index": index_results, "delete": delete_results} + logger.info(f"Bulk update complete: {json.dumps(summary_results)}")