check_and_test_package.yml

name: CI

on:
  push:
    # The CI is executed on every push on every branch
    branches:
      - master
  pull_request:
    # The CI is executed on every pull request to the main branch
    branches:
      - master

  schedule:
    # The CI is executed every day at 8am
    - cron: "0 8 * * *"

env:
  CACHE_NUMBER: 3 # Increase to reset cache

jobs:
  check-code:
    name: Check code
    runs-on: ubuntu-latest

    steps:
      - name: Checkout
        uses: actions/checkout@v3

      - name: Upgrade pip and setuptools
        run: python3 -m pip install pip setuptools --upgrade

      - name: Install types-paramiko
        run: python3 -m pip install types-paramiko

      - name: Install VaMPy
        run: python3 -m pip install .[test]

      - name: Check code with Flake8
        run: python3 -m flake8

      - name: Check code with mypy
        run: python3 -m mypy

  test-code:
    needs: check-code
    strategy:
      matrix:
        include:
          - os: ubuntu-latest
            label: linux-64
            prefix: /usr/share/miniconda3/envs/vampy
          - os: macos-latest
            label: osx-64
            prefix: /Users/runner/miniconda3/envs/vampy

    name: Test VaMPy on ${{ matrix.label }}
    runs-on: ${{ matrix.os }}

    # https://github.com/marketplace/actions/setup-miniconda#use-a-default-shell
    defaults:
      run:
        shell: bash -l {0}

    steps:
      - name: Checkout
        uses: actions/checkout@v3

      - name: Upgrade pip and setuptools
        run: |
          python3 -m pip install pip setuptools --upgrade

      # See: https://github.com/marketplace/actions/setup-miniconda
      - name: Setup Mambaforge
        uses: conda-incubator/setup-miniconda@v2
        with:
          miniforge-variant: Mambaforge
          miniforge-version: latest
          channels: conda-forge
          activate-environment: vampy
          use-mamba: true

      - name: Set cache date
        run: echo "DATE=$(date +'%Y%m%d')" >> $GITHUB_ENV

      - uses: actions/cache@v2
        with:
          path: ${{ matrix.prefix }}
          key: ${{ matrix.label }}-conda-${{ hashFiles('environment.yml') }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }}
        id: cache

      - name: Update environment
        run: mamba env update -n vampy -f environment.yml
        if: steps.cache.outputs.cache-hit != 'true'

      - name: Install VaMPy
        run: python3 -m pip install --editable .[test]

      - name: Install OasisMove from specific branch for moving simulations
        run: python3 -m pip install --editable git+https://github.com/KVSlab/OasisMove.git@moving-la#egg=oasismove

      - name: Run tests
        run: python3 -m pytest tests

      - name: Upload coverage report to codecov
        if: matrix.os == 'ubuntu-latest'
        uses: codecov/codecov-action@v3
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          files: ./coverage.xml
          fail_ci_if_error: false
          verbose: true