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Ortholog mapping not finding all orthologs #962

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dlesper opened this issue Jan 6, 2025 · 1 comment
Open

Ortholog mapping not finding all orthologs #962

dlesper opened this issue Jan 6, 2025 · 1 comment
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@dlesper
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dlesper commented Jan 6, 2025

When searching gene: SCGB2A1 for dataset collection: scRNA-seq - Crista, mouse (Bermingham-McDonogh) you incorrectly get that "Neither the given gene symbol(s) nor corresponding orthologs were found in this dataset. "

However when searching gene: SCGB2A2 on the same dataset collection values show up. SCGB2A2 is an ortholog to SCGB2A1.

Screenshot 2025-01-06 at 12 51 25 PM

Screenshot 2025-01-06 at 12 51 44 PM

@dlesper dlesper added the bug Something isn't working label Jan 6, 2025
@adkinsrs
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adkinsrs commented Jan 6, 2025

Spot-checked one of the datasets in that profile and while Scgb2a2 is in the dataset, Scgb2a1 was not found. So if the ortholog feature mapping file does not have an entry saying that Scgb2a1 maps to Scgb2a2 (or any organism-specific variants on casing) then the ortholog will not be found.

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