Errors 308 and 277 during compilation

[piosierra]

Hello,

I get 27 of these errors during compilation. Do you know the reason for it? Should I update some parameters with the last versions of rust?

Thanks.

error[E0308]: mismatched types
--> /home/pio/.cargo/registry/src/github.com-1ecc6299db9ec823/lexical-core-0.7.4/src/atof/algorithm/bhcomp.rs:62:24
|
62 | let bytes = bits / Limb::BITS;
| ^^^^^^^^^^ expected usize, found u32

error[E0277]: cannot divide usize by u32
--> /home/pio/.cargo/registry/src/github.com-1ecc6299db9ec823/lexical-core-0.7.4/src/atof/algorithm/bhcomp.rs:62:22
|
62 | let bytes = bits / Limb::BITS;
| ^ no implementation for usize / u32
|
= help: the trait Div<u32> is not implemented for usize

[HopedWall]

Hello @piosierra,

yes, these errors are due to the dependencies being outdated (the last update to this project was ~ 1.5 years ago).
I've updated the libraries with cargo update, and now it appears to compile correctly. I've also pushed these changes, so you can just pull to get the latest version with the updated dependencies.

Let me know if this fixes the issue.

[piosierra]

Hello,
Thanks for the update.
I updated it but now I get these error with different GFAs. It is always this same error.

gfa_to_vcf -i component.0.gfa -o allX.vcf -p CM0120270.1
thread 'main' panicked at 'no entry found for key', src/variant_identification.rs:75:34
note: run with RUST_BACKTRACE=1 environment variable to display a backtrace

[HopedWall]

Hi again,
if possible could you please share the gaf you are using? If gaf is big (and has a complex structure) you are probably better off with vg deconstruct, as my tool is only guaranteed to work correctly on simpler gafs. I'd like to improve it in the future, but as of now I'm working on other projects.