diff --git a/usegalaxy.org/annotation.yml.lock b/usegalaxy.org/annotation.yml.lock index 4b6d6701..06e85f9a 100644 --- a/usegalaxy.org/annotation.yml.lock +++ b/usegalaxy.org/annotation.yml.lock @@ -25,6 +25,7 @@ tools: revisions: - 09855551d713 - 28433faa6e42 + - bd0e53f3a891 - ca6d970d931c tool_panel_section_id: annotation tool_panel_section_label: Annotation @@ -34,6 +35,7 @@ tools: - 6519ebe25019 - 7be22100e5e1 - dc027fa56d55 + - f1e653756174 tool_panel_section_id: annotation tool_panel_section_label: Annotation - name: bp_genbank2gff3 @@ -55,6 +57,7 @@ tools: - 0d243f458b53 - 1e62c28ba91d - 2a5b8b9936bf + - 2babe6d5c561 - 4048d82f0c88 - 41030a6c03b7 - 46ae58b1d792 @@ -199,6 +202,7 @@ tools: - 78608ec02d62 - 809e42326fc2 - 91887494eb97 + - 9b2b122d0415 - dbe2b2204555 tool_panel_section_id: annotation tool_panel_section_label: Annotation @@ -388,6 +392,7 @@ tools: - name: funannotate_compare owner: iuc revisions: + - 0418d28136de - 30f08d74024f - 57c6718cbfcc - a7ce2601500c @@ -401,6 +406,7 @@ tools: - 3bbe70fef6df - 582fd74dc2a1 - 756376aeb1ae + - 9c15ca7e764e - 9feee7fc49a1 - d0336d67702b tool_panel_section_id: annotation @@ -409,6 +415,7 @@ tools: owner: iuc revisions: - 1bc5a03faf2e + - 4b96ced19f75 - 51b6ee65ef7f - f31125bb85ea - f77d7b685bb3 @@ -430,6 +437,7 @@ tools: owner: bgruening revisions: - 1ac12c0cc7a0 + - 7ccc6234b54e - 8e9e228c54c4 tool_panel_section_id: annotation tool_panel_section_label: Annotation diff --git a/usegalaxy.org/assembly.yml.lock b/usegalaxy.org/assembly.yml.lock index 155d27c0..2d98e38a 100644 --- a/usegalaxy.org/assembly.yml.lock +++ b/usegalaxy.org/assembly.yml.lock @@ -12,6 +12,7 @@ tools: - 8f9f06995f98 - 9e3e80cc4ad4 - d10bdad2fd17 + - e022dff952df tool_panel_section_id: assembly tool_panel_section_label: Assembly - name: quast @@ -227,6 +228,7 @@ tools: revisions: - 045c7c3d8e59 - 0ee0c3089254 + - 284a1cb82b61 - 366a11d316a7 - 3f7be05a1597 - 5bec28269d95 @@ -275,6 +277,7 @@ tools: revisions: - 01210c4e9144 - 3169a38c2656 + - 460fad600dce - b2f674562a18 tool_panel_section_id: assembly tool_panel_section_label: Assembly @@ -298,6 +301,7 @@ tools: - name: salsa owner: iuc revisions: + - 58a870ef434c - 9a22227bb6d0 - ba7b0f11e470 - f77f7a7f3b83 @@ -350,6 +354,7 @@ tools: - 425e63adcc5d - d87433f2a54d - fc925f53cae7 + - ff4031bfaa22 tool_panel_section_id: assembly tool_panel_section_label: Assembly - name: smudgeplot @@ -382,6 +387,7 @@ tools: owner: iuc revisions: - 8e66f695d859 + - f73ab5187eed tool_panel_section_id: assembly tool_panel_section_label: Assembly - name: pairtools_dedup diff --git a/usegalaxy.org/bbtools.yml.lock b/usegalaxy.org/bbtools.yml.lock index 3d8c89d8..af02e637 100644 --- a/usegalaxy.org/bbtools.yml.lock +++ b/usegalaxy.org/bbtools.yml.lock @@ -9,6 +9,7 @@ tools: - 0840ba83860c - 159b04e36791 - 1c427e24fb79 + - 7beb76ffbc0f - bf0cb5dd02f2 - d1f62024a08b tool_panel_section_id: bbtools @@ -18,6 +19,7 @@ tools: revisions: - 3171f7f52576 - 3f94a2e3d513 + - 456d8ebb6a28 - 517464809c33 - 7f19559b8b55 - b394de3cf6e8 @@ -31,6 +33,7 @@ tools: - 6d084528a6f1 - 82ced0e47b9d - c05232655d00 + - cab19c0452c4 tool_panel_section_id: bbtools tool_panel_section_label: BBTools - name: bbtools_bbnorm @@ -40,6 +43,7 @@ tools: - 1baa4ad1ac2f - 1ef267476a17 - 3fc12917bbdb + - 770bceda7785 - a9329b77db78 tool_panel_section_id: bbtools tool_panel_section_label: BBTools @@ -47,6 +51,7 @@ tools: owner: iuc revisions: - 66b138a2e74c + - 7e041c120b96 - adec76ebc868 - df9743790176 - ee407fae3ccd @@ -56,6 +61,7 @@ tools: - name: bbtools_tadpole owner: iuc revisions: + - 0ddf147d1897 - 20aef74d20a1 - 654c9da47f74 - cbc75076778f diff --git a/usegalaxy.org/chemicaltoolbox.yml.lock b/usegalaxy.org/chemicaltoolbox.yml.lock index ca78b871..e90c6942 100644 --- a/usegalaxy.org/chemicaltoolbox.yml.lock +++ b/usegalaxy.org/chemicaltoolbox.yml.lock @@ -66,6 +66,7 @@ tools: - name: openbabel_compound_convert owner: bgruening revisions: + - 4242b4d68e9c - b59c91adeac1 - e2c36f62e22f tool_panel_section_id: chemicaltoolbox @@ -242,6 +243,7 @@ tools: revisions: - 2f7702fd0a4c - 5b85006245f3 + - 6ab1a261520a tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox - 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330514267c57 + - f5d7ffbb2d33 tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox - name: mdanalysis_angle @@ -494,23 +502,27 @@ tools: owner: bgruening revisions: - b2569e22b40c + - c5de6c19eb06 tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox - name: openbabel_filter owner: bgruening revisions: + - 988085c7a0ea - df4dc55197dd tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox - name: openbabel_svg_depiction owner: bgruening revisions: + - 75ee9c410951 - 7672039a0bb0 tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox - name: openbabel_genprop owner: bgruening revisions: + - 50eaae9df8d3 - b249bf9be0d1 tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox @@ -518,11 +530,13 @@ tools: owner: bgruening revisions: - 274193d6c443 + - 985ab0acd514 tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox - name: openbabel_remsmall owner: bgruening revisions: + - 81836d586797 - d7f0ca1f2669 tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox @@ -530,6 +544,7 @@ tools: owner: bgruening revisions: - 5486f7a2b0cb + - fac2c28b4c55 tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox - name: sucos_clustering @@ -548,6 +563,7 @@ tools: owner: bgruening revisions: - 2c5c7da26e08 + - 8302ab092300 tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox - name: rdock_rbcavity diff --git a/usegalaxy.org/chip_seq.yml.lock b/usegalaxy.org/chip_seq.yml.lock index bcbf8c63..8893a553 100644 --- a/usegalaxy.org/chip_seq.yml.lock +++ b/usegalaxy.org/chip_seq.yml.lock @@ -55,6 +55,7 @@ tools: - 163688bb8f73 - 194e3f2c1d86 - 2605cbdaa7d8 + - f907216064f6 tool_panel_section_id: chip_seq tool_panel_section_label: ChIP-seq - name: tag_pileup_frequency @@ -67,6 +68,7 @@ tools: - name: pe_histogram owner: iuc revisions: + - 594b85e4237a - bd1416eea1f0 tool_panel_section_id: chip_seq tool_panel_section_label: ChIP-seq diff --git a/usegalaxy.org/climate_analysis.yml.lock b/usegalaxy.org/climate_analysis.yml.lock index 2d9cfd1d..920d7cae 100644 --- a/usegalaxy.org/climate_analysis.yml.lock +++ b/usegalaxy.org/climate_analysis.yml.lock @@ -20,6 +20,7 @@ tools: - name: c3s owner: climate revisions: + - 21e8386cf36f - 250554670f72 - bd153c794da1 tool_panel_section_id: climate_analysis diff --git a/usegalaxy.org/convert_formats.yml.lock b/usegalaxy.org/convert_formats.yml.lock index fdfb6a77..a544dfc7 100644 --- a/usegalaxy.org/convert_formats.yml.lock +++ b/usegalaxy.org/convert_formats.yml.lock @@ -8,6 +8,7 @@ tools: revisions: - 27673f5b5343 - 359e043a285c + - 767943cd85bf - 7ecb45126cd2 - b226e0c805a5 - f5792425ea50 @@ -60,6 +61,7 @@ tools: revisions: - 2dcfbbf9071a - 68f57cc8fad0 + - 78fb18899c99 - b8cdc0507586 tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats @@ -69,11 +71,13 @@ tools: - 297962e79f39 - 4844c1810c16 - a64c24430f5e + - ac3fed111eb6 tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats - name: fastq_to_tabular owner: devteam revisions: + - 43807a65369f - 4b347702c4aa - 614a63f14adf - ccf4e1d1fcbe @@ -92,6 +96,7 @@ tools: - 0f0cf480051b - 158b5b2a164a - 60ca8d013263 + - 6ee334657360 - e13f565068d6 - e5340c09200a tool_panel_section_id: convert_formats @@ -99,6 +104,7 @@ tools: - name: crossmap_bed owner: iuc revisions: + - 50b7875a49d0 - 91efc13d3ec1 - cdbdce00f5f6 - ee86b27291b5 @@ -112,6 +118,7 @@ tools: - 5f893ed3c5ed - e72c320c17c1 - e8d84292e510 + - f7229c8445da tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats - name: crossmap_vcf @@ -122,6 +129,7 @@ tools: - 71730c177cdf - 97979c3d179f - b21851ddcc79 + - d4965adac10c tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats - name: crossmap_gff @@ -130,6 +138,7 @@ tools: - 09c6a9e067f9 - 42b239a32349 - 4d97434ea0fb + - 75a08e10cc76 - 88d180fb6d67 tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats @@ -153,6 +162,7 @@ tools: owner: iuc revisions: - 356dc923f8d3 + - 3c6f9e8a4c17 - 8067dfa00ed2 tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats @@ -200,6 +210,7 @@ tools: - 31dfed0f0eed - 391a19477a12 - 39881709807e + - 3e81299dfce3 - 8dbc700cb940 tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats @@ -209,11 +220,13 @@ tools: - 3cf310697624 - 545054b15d7c - 6153e8ada1ee + - ab6c14374bc0 tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats - name: ucsc_wigtobigwig owner: iuc revisions: + - 98704d357ede - a2f83a375bf2 tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats @@ -227,11 +240,13 @@ tools: owner: iuc revisions: - 65a69de1e294 + - 8d6686664021 tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats - name: tooldistillator_summarize owner: iuc revisions: - 6ff67d2860e1 + - f3233d395549 tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats diff --git a/usegalaxy.org/data_managers.yml.lock b/usegalaxy.org/data_managers.yml.lock index 91f6fe58..25d3dcca 100644 --- a/usegalaxy.org/data_managers.yml.lock +++ b/usegalaxy.org/data_managers.yml.lock @@ -102,6 +102,7 @@ tools: owner: iuc revisions: - 13851aefa67a + - 1e34d2e3d285 - 539b008cfe1c - e4b4837f06f5 tool_panel_section_id: data_managers @@ -116,6 +117,7 @@ tools: - name: data_manager_mapseq owner: iuc revisions: + - 23511530b8fd - 4cd97cc67061 - dbf2735e8480 tool_panel_section_id: data_managers diff --git a/usegalaxy.org/evolution.yml.lock b/usegalaxy.org/evolution.yml.lock index 0a727ed7..1c44e929 100644 --- a/usegalaxy.org/evolution.yml.lock +++ b/usegalaxy.org/evolution.yml.lock @@ -12,6 +12,7 @@ tools: - name: fasttree owner: iuc revisions: + - c7e73acfa3eb - e005e659ae21 - ef46a404db96 tool_panel_section_id: evolution @@ -19,6 +20,7 @@ tools: - name: iqtree owner: iuc revisions: + - 0878b7fd5260 - 24d024316465 - 524d31add34a - 563c3aa769f2 @@ -32,6 +34,7 @@ tools: - name: tn93 owner: iuc revisions: + - 2fd21f5b16bc - 9d793e88e15f - b38f620a3628 - ccebde0e2d61 @@ -40,6 +43,7 @@ tools: - name: tn93_filter owner: iuc revisions: + - 1aa73004ba9b - ba95715078c9 - cf50aeb956f2 tool_panel_section_id: evolution @@ -49,6 +53,7 @@ tools: revisions: - 112d80c9ccca - af03f3398f03 + - eb6f0ec5b95e tool_panel_section_id: evolution tool_panel_section_label: Evolution - name: tn93_readreduce @@ -57,6 +62,7 @@ tools: - 1d2ec0b0a0a7 - 84849140a3bc - bdaadfd0c843 + - c176164dc8a5 tool_panel_section_id: evolution tool_panel_section_label: Evolution - name: tasmanian_mismatch diff --git a/usegalaxy.org/fasta_fastq.yml.lock b/usegalaxy.org/fasta_fastq.yml.lock index 8bf67c02..61cdc069 100644 --- a/usegalaxy.org/fasta_fastq.yml.lock +++ b/usegalaxy.org/fasta_fastq.yml.lock @@ -18,6 +18,7 @@ tools: - 44e2cc14f75b - 49370cb85f0f - 4e5056fefd88 + - 5eb7e84243f2 - 64172f1c1202 - 660cffd8d92a - 8c0175e03cee @@ -44,6 +45,7 @@ tools: - 1d8fe9bc4cb0 - 65b93b623c77 - c59d48774d03 + - d60c3f704da0 - dbf9c561ef29 tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ @@ -122,6 +124,7 @@ tools: revisions: - 09a2199cd356 - 822cc1e6274e + - 8d958759cf2a - c885369b207b tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ @@ -130,6 +133,7 @@ tools: revisions: - 2ccb8dcabddc - 3e396e702cea + - b41c2c1bcfbf - ef49268ee579 tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ @@ -137,6 +141,7 @@ tools: owner: devteam revisions: - 03d57fea6482 + - 523c2aff0376 - b7ce72b00e62 - f3936d0632cb tool_panel_section_id: fasta_fastq @@ -152,6 +157,7 @@ tools: revisions: - 249c8393f2d4 - 35e38452bb3f + - 397dc333436b - 9bbe5b7ffa12 - e39cc71d3ed6 tool_panel_section_id: fasta_fastq @@ -159,6 +165,7 @@ tools: - name: fastq_masker_by_quality owner: devteam revisions: + - 4e1d64e6385f - 9282652e7234 - 9dfda4e310ed - eb592e9ec47a @@ -170,6 +177,7 @@ tools: - 4ac14b275aca - 5b87038565bb - 7861f3b10c68 + - e30352e889fe tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ - name: fastq_groomer @@ -178,6 +186,7 @@ tools: - 47e5dbc3e790 - 71e5fa25b8a2 - 8611b80a14d6 + - e9f8633db0a2 tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ - name: fastq_filter @@ -185,6 +194,7 @@ tools: revisions: - 06934412f56d - 10b75444feae + - '144275714590' - 81a9090d6df3 tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ @@ -192,6 +202,7 @@ tools: owner: devteam revisions: - 56389130cb63 + - 9115b978ce10 - b05e39b9c170 - f1dc2a761c30 tool_panel_section_id: fasta_fastq @@ -229,6 +240,7 @@ tools: - 2d0d13b0b0f1 - 33794bdb7fe0 - b63b2bfb3ea3 + - f0b18efb97f1 tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ - name: fastq_trimmer_by_quality @@ -273,6 +285,7 @@ tools: owner: devteam revisions: - 2051602a5f97 + - 5cbde03c1103 - 7d37cfda8e00 - e12f68d2cc4e tool_panel_section_id: fasta_fastq @@ -299,6 +312,7 @@ tools: revisions: - 2f804526f5fd - b4c6f054210a + - f69501361cec tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ - name: sickle @@ -312,6 +326,7 @@ tools: revisions: - 71f649c23021 - bf04bd405d5b + - d3f58a0dc09d tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ - name: umi_tools_count @@ -319,6 +334,7 @@ tools: revisions: - 276b4111b253 - 8250ea3a1501 + - 9570563fb686 - a535cf1e5da4 tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ @@ -352,6 +368,7 @@ tools: - name: umi_tools_extract owner: iuc revisions: + - 015cf18f4a15 - 6a675c3aa610 - 9fa7803d1c51 - f3759eec3018 @@ -360,18 +377,21 @@ tools: - name: umi_tools_whitelist owner: iuc revisions: + - 4c8a1c7d3608 - 953b4821b183 tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ - name: umi_tools_dedup owner: iuc revisions: + - 04e09969d376 - f1d33e4c7bd8 tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ - name: umi_tools_group owner: iuc revisions: + - 257be15474a7 - d6255614afd7 tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ diff --git a/usegalaxy.org/fastq_quality_control.yml.lock b/usegalaxy.org/fastq_quality_control.yml.lock index f583eab5..c631eb02 100644 --- a/usegalaxy.org/fastq_quality_control.yml.lock +++ b/usegalaxy.org/fastq_quality_control.yml.lock @@ -6,6 +6,7 @@ tools: - 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