From 7a437fc0880dd8c24ff5e324332475c47796cb6b Mon Sep 17 00:00:00 2001 From: Delphine-L <11195061+Delphine-L@users.noreply.github.com> Date: Sat, 14 Sep 2024 10:05:57 +0000 Subject: [PATCH] [create-pull-request] automated change --- usegalaxy.org/annotation.yml.lock | 6 ++++ usegalaxy.org/assembly.yml.lock | 6 ++++ usegalaxy.org/bbtools.yml.lock | 6 ++++ usegalaxy.org/chemicaltoolbox.yml.lock | 16 ++++++++++ usegalaxy.org/chip_seq.yml.lock | 1 + usegalaxy.org/convert_formats.yml.lock | 10 +++++++ usegalaxy.org/data_managers.yml.lock | 1 + usegalaxy.org/evolution.yml.lock | 1 + usegalaxy.org/fasta_fastq.yml.lock | 3 ++ usegalaxy.org/fastq_quality_control.yml.lock | 2 ++ usegalaxy.org/get_data.yml.lock | 1 + usegalaxy.org/graph_display_data.yml.lock | 2 ++ usegalaxy.org/mapping.yml.lock | 5 ++++ usegalaxy.org/metagenomic_analysis.yml.lock | 3 ++ usegalaxy.org/motif.yml.lock | 3 ++ usegalaxy.org/multiple_alignments.yml.lock | 1 + usegalaxy.org/nanopore.yml.lock | 2 ++ usegalaxy.org/proteomics.yml.lock | 2 ++ usegalaxy.org/rna_seq.yml.lock | 6 ++++ usegalaxy.org/sam_bam.yml.lock | 16 ++++++++++ .../sequence_contamination_filtering.yml.lock | 1 + usegalaxy.org/single_cell.yml.lock | 6 ++++ usegalaxy.org/text_manipulation.yml.lock | 6 ++++ usegalaxy.org/training_metabolomics.yml.lock | 13 ++++++++ usegalaxy.org/variant_calling.yml.lock | 3 ++ usegalaxy.org/vcf_bcf.yml.lock | 30 +++++++++++++++++++ 26 files changed, 152 insertions(+) diff --git a/usegalaxy.org/annotation.yml.lock b/usegalaxy.org/annotation.yml.lock index 4b6d6701..6f38a243 100644 --- a/usegalaxy.org/annotation.yml.lock +++ b/usegalaxy.org/annotation.yml.lock @@ -55,6 +55,7 @@ tools: - 0d243f458b53 - 1e62c28ba91d - 2a5b8b9936bf + - 2babe6d5c561 - 4048d82f0c88 - 41030a6c03b7 - 46ae58b1d792 @@ -199,6 +200,7 @@ tools: - 78608ec02d62 - 809e42326fc2 - 91887494eb97 + - 9b2b122d0415 - dbe2b2204555 tool_panel_section_id: annotation tool_panel_section_label: Annotation @@ -388,6 +390,7 @@ tools: - name: funannotate_compare owner: iuc revisions: + - 0418d28136de - 30f08d74024f - 57c6718cbfcc - a7ce2601500c @@ -401,6 +404,7 @@ tools: - 3bbe70fef6df - 582fd74dc2a1 - 756376aeb1ae + - 9c15ca7e764e - 9feee7fc49a1 - d0336d67702b tool_panel_section_id: annotation @@ -409,6 +413,7 @@ tools: owner: iuc revisions: - 1bc5a03faf2e + - 4b96ced19f75 - 51b6ee65ef7f - f31125bb85ea - f77d7b685bb3 @@ -430,6 +435,7 @@ tools: owner: bgruening revisions: - 1ac12c0cc7a0 + - 7ccc6234b54e - 8e9e228c54c4 tool_panel_section_id: annotation tool_panel_section_label: Annotation diff --git a/usegalaxy.org/assembly.yml.lock b/usegalaxy.org/assembly.yml.lock index 155d27c0..2d98e38a 100644 --- a/usegalaxy.org/assembly.yml.lock +++ b/usegalaxy.org/assembly.yml.lock @@ -12,6 +12,7 @@ tools: - 8f9f06995f98 - 9e3e80cc4ad4 - d10bdad2fd17 + - e022dff952df tool_panel_section_id: assembly tool_panel_section_label: Assembly - name: quast @@ -227,6 +228,7 @@ tools: revisions: - 045c7c3d8e59 - 0ee0c3089254 + - 284a1cb82b61 - 366a11d316a7 - 3f7be05a1597 - 5bec28269d95 @@ -275,6 +277,7 @@ tools: revisions: - 01210c4e9144 - 3169a38c2656 + - 460fad600dce - b2f674562a18 tool_panel_section_id: assembly tool_panel_section_label: Assembly @@ -298,6 +301,7 @@ tools: - name: salsa owner: iuc revisions: + - 58a870ef434c - 9a22227bb6d0 - ba7b0f11e470 - f77f7a7f3b83 @@ -350,6 +354,7 @@ tools: - 425e63adcc5d - d87433f2a54d - fc925f53cae7 + - ff4031bfaa22 tool_panel_section_id: assembly tool_panel_section_label: Assembly - name: smudgeplot @@ -382,6 +387,7 @@ tools: owner: iuc revisions: - 8e66f695d859 + - f73ab5187eed tool_panel_section_id: assembly tool_panel_section_label: Assembly - name: pairtools_dedup diff --git a/usegalaxy.org/bbtools.yml.lock b/usegalaxy.org/bbtools.yml.lock index 3d8c89d8..af02e637 100644 --- a/usegalaxy.org/bbtools.yml.lock +++ b/usegalaxy.org/bbtools.yml.lock @@ -9,6 +9,7 @@ tools: - 0840ba83860c - 159b04e36791 - 1c427e24fb79 + - 7beb76ffbc0f - bf0cb5dd02f2 - d1f62024a08b tool_panel_section_id: bbtools @@ -18,6 +19,7 @@ tools: revisions: - 3171f7f52576 - 3f94a2e3d513 + - 456d8ebb6a28 - 517464809c33 - 7f19559b8b55 - b394de3cf6e8 @@ -31,6 +33,7 @@ tools: - 6d084528a6f1 - 82ced0e47b9d - c05232655d00 + - cab19c0452c4 tool_panel_section_id: bbtools tool_panel_section_label: BBTools - name: bbtools_bbnorm @@ -40,6 +43,7 @@ tools: - 1baa4ad1ac2f - 1ef267476a17 - 3fc12917bbdb + - 770bceda7785 - a9329b77db78 tool_panel_section_id: bbtools tool_panel_section_label: BBTools @@ -47,6 +51,7 @@ tools: owner: iuc revisions: - 66b138a2e74c + - 7e041c120b96 - adec76ebc868 - df9743790176 - ee407fae3ccd @@ -56,6 +61,7 @@ tools: - name: bbtools_tadpole owner: iuc revisions: + - 0ddf147d1897 - 20aef74d20a1 - 654c9da47f74 - cbc75076778f diff --git a/usegalaxy.org/chemicaltoolbox.yml.lock b/usegalaxy.org/chemicaltoolbox.yml.lock index ca78b871..e90c6942 100644 --- a/usegalaxy.org/chemicaltoolbox.yml.lock +++ b/usegalaxy.org/chemicaltoolbox.yml.lock @@ -66,6 +66,7 @@ tools: - name: openbabel_compound_convert owner: bgruening revisions: + - 4242b4d68e9c - b59c91adeac1 - e2c36f62e22f tool_panel_section_id: chemicaltoolbox @@ -242,6 +243,7 @@ tools: revisions: - 2f7702fd0a4c - 5b85006245f3 + - 6ab1a261520a tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox - name: gromacs_extract_topology @@ -319,6 +321,7 @@ tools: - name: openbabel_subsearch owner: bgruening revisions: + - 9adf3fae2771 - c19608db6b15 tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox @@ -344,12 +347,14 @@ tools: owner: bgruening revisions: - 6e4b7e0c61a6 + - 7b6fd1c273cd tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox - name: openbabel_remions owner: bgruening revisions: - 4e3b2049a4d3 + - f70b83b730ac tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox - name: chembl_structure_pipeline @@ -373,6 +378,7 @@ tools: - name: openbabel_remove_protonation_state owner: bgruening revisions: + - 22a866858b81 - e376ba0fcde0 tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox @@ -427,6 +433,7 @@ tools: owner: bgruening revisions: - 01ab890bf0ad + - a638d8d13bb3 tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox - name: mdanalysis_rdf @@ -440,6 +447,7 @@ tools: owner: bgruening revisions: - 330514267c57 + - f5d7ffbb2d33 tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox - name: mdanalysis_angle @@ -494,23 +502,27 @@ tools: owner: bgruening revisions: - b2569e22b40c + - c5de6c19eb06 tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox - name: openbabel_filter owner: bgruening revisions: + - 988085c7a0ea - df4dc55197dd tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox - name: openbabel_svg_depiction owner: bgruening revisions: + - 75ee9c410951 - 7672039a0bb0 tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox - name: openbabel_genprop owner: bgruening revisions: + - 50eaae9df8d3 - b249bf9be0d1 tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox @@ -518,11 +530,13 @@ tools: owner: bgruening revisions: - 274193d6c443 + - 985ab0acd514 tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox - name: openbabel_remsmall owner: bgruening revisions: + - 81836d586797 - d7f0ca1f2669 tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox @@ -530,6 +544,7 @@ tools: owner: bgruening revisions: - 5486f7a2b0cb + - fac2c28b4c55 tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox - name: sucos_clustering @@ -548,6 +563,7 @@ tools: owner: bgruening revisions: - 2c5c7da26e08 + - 8302ab092300 tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox - name: rdock_rbcavity diff --git a/usegalaxy.org/chip_seq.yml.lock b/usegalaxy.org/chip_seq.yml.lock index bcbf8c63..67ed2ffb 100644 --- a/usegalaxy.org/chip_seq.yml.lock +++ b/usegalaxy.org/chip_seq.yml.lock @@ -55,6 +55,7 @@ tools: - 163688bb8f73 - 194e3f2c1d86 - 2605cbdaa7d8 + - f907216064f6 tool_panel_section_id: chip_seq tool_panel_section_label: ChIP-seq - name: tag_pileup_frequency diff --git a/usegalaxy.org/convert_formats.yml.lock b/usegalaxy.org/convert_formats.yml.lock index fdfb6a77..f10c36b0 100644 --- a/usegalaxy.org/convert_formats.yml.lock +++ b/usegalaxy.org/convert_formats.yml.lock @@ -8,6 +8,7 @@ tools: revisions: - 27673f5b5343 - 359e043a285c + - 767943cd85bf - 7ecb45126cd2 - b226e0c805a5 - f5792425ea50 @@ -92,6 +93,7 @@ tools: - 0f0cf480051b - 158b5b2a164a - 60ca8d013263 + - 6ee334657360 - e13f565068d6 - e5340c09200a tool_panel_section_id: convert_formats @@ -99,6 +101,7 @@ tools: - name: crossmap_bed owner: iuc revisions: + - 50b7875a49d0 - 91efc13d3ec1 - cdbdce00f5f6 - ee86b27291b5 @@ -112,6 +115,7 @@ tools: - 5f893ed3c5ed - e72c320c17c1 - e8d84292e510 + - f7229c8445da tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats - name: crossmap_vcf @@ -122,6 +126,7 @@ tools: - 71730c177cdf - 97979c3d179f - b21851ddcc79 + - d4965adac10c tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats - name: crossmap_gff @@ -130,6 +135,7 @@ tools: - 09c6a9e067f9 - 42b239a32349 - 4d97434ea0fb + - 75a08e10cc76 - 88d180fb6d67 tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats @@ -200,6 +206,7 @@ tools: - 31dfed0f0eed - 391a19477a12 - 39881709807e + - 3e81299dfce3 - 8dbc700cb940 tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats @@ -209,6 +216,7 @@ tools: - 3cf310697624 - 545054b15d7c - 6153e8ada1ee + - ab6c14374bc0 tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats - name: ucsc_wigtobigwig @@ -227,11 +235,13 @@ tools: owner: iuc revisions: - 65a69de1e294 + - a7387ce2a8ca tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats - name: tooldistillator_summarize owner: iuc revisions: - 6ff67d2860e1 + - def7a82d23e1 tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats diff --git a/usegalaxy.org/data_managers.yml.lock b/usegalaxy.org/data_managers.yml.lock index 91f6fe58..91f8ae0a 100644 --- a/usegalaxy.org/data_managers.yml.lock +++ b/usegalaxy.org/data_managers.yml.lock @@ -102,6 +102,7 @@ tools: owner: iuc revisions: - 13851aefa67a + - 1e34d2e3d285 - 539b008cfe1c - e4b4837f06f5 tool_panel_section_id: data_managers diff --git a/usegalaxy.org/evolution.yml.lock b/usegalaxy.org/evolution.yml.lock index 0a727ed7..9c688cce 100644 --- a/usegalaxy.org/evolution.yml.lock +++ b/usegalaxy.org/evolution.yml.lock @@ -19,6 +19,7 @@ tools: - name: iqtree owner: iuc revisions: + - 0878b7fd5260 - 24d024316465 - 524d31add34a - 563c3aa769f2 diff --git a/usegalaxy.org/fasta_fastq.yml.lock b/usegalaxy.org/fasta_fastq.yml.lock index 8bf67c02..e0c6b5a3 100644 --- a/usegalaxy.org/fasta_fastq.yml.lock +++ b/usegalaxy.org/fasta_fastq.yml.lock @@ -18,6 +18,7 @@ tools: - 44e2cc14f75b - 49370cb85f0f - 4e5056fefd88 + - 5eb7e84243f2 - 64172f1c1202 - 660cffd8d92a - 8c0175e03cee @@ -44,6 +45,7 @@ tools: - 1d8fe9bc4cb0 - 65b93b623c77 - c59d48774d03 + - d60c3f704da0 - dbf9c561ef29 tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ @@ -299,6 +301,7 @@ tools: revisions: - 2f804526f5fd - b4c6f054210a + - f69501361cec tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ - name: sickle diff --git a/usegalaxy.org/fastq_quality_control.yml.lock b/usegalaxy.org/fastq_quality_control.yml.lock index f583eab5..487d05c5 100644 --- a/usegalaxy.org/fastq_quality_control.yml.lock +++ b/usegalaxy.org/fastq_quality_control.yml.lock @@ -6,6 +6,7 @@ tools: - name: fastqc owner: devteam revisions: + - 2c64fded1286 - 3d0c7bdf12f5 - 5ec9f6bceaee - e7b2202befea @@ -33,6 +34,7 @@ tools: - b2f1f75d49c4 - bf675f34b056 - f7985e0479b9 + - f7e2f1eb3a16 tool_panel_section_id: fastq_quality_control tool_panel_section_label: FASTQ Quality Control - name: fastq_stats diff --git a/usegalaxy.org/get_data.yml.lock b/usegalaxy.org/get_data.yml.lock index 90d0e843..a4971f56 100644 --- a/usegalaxy.org/get_data.yml.lock +++ b/usegalaxy.org/get_data.yml.lock @@ -18,6 +18,7 @@ tools: - 7068f48d0ef9 - 734abc7ac21d - 83c7d564b128 + - 8848455c0270 - 964579f93c54 - aad3885b3216 - ba931a59dd59 diff --git a/usegalaxy.org/graph_display_data.yml.lock b/usegalaxy.org/graph_display_data.yml.lock index 407cbbee..a6119e71 100644 --- a/usegalaxy.org/graph_display_data.yml.lock +++ b/usegalaxy.org/graph_display_data.yml.lock @@ -29,6 +29,7 @@ tools: revisions: - 1c5dcef5ce0f - 62e3a4e8c54c + - f234e2e59d76 tool_panel_section_id: graph_display_data tool_panel_section_label: Graph/Display Data - name: plotly_regression_performance_plots @@ -320,6 +321,7 @@ tools: - 0e592dcaeb7f - 74074746ccd8 - b1260bca5fdc + - c4b77883c0a7 - dc3fe98e7b37 tool_panel_section_id: graph_display_data tool_panel_section_label: Graph/Display Data diff --git a/usegalaxy.org/mapping.yml.lock b/usegalaxy.org/mapping.yml.lock index 1550393c..ee9fc6b2 100644 --- a/usegalaxy.org/mapping.yml.lock +++ b/usegalaxy.org/mapping.yml.lock @@ -7,6 +7,7 @@ tools: owner: iuc revisions: - 396cc0c65700 + - 4ad7321205c9 - 8a7462c0ac14 - a07a2d9ddd42 - a287431cdf4f @@ -115,6 +116,7 @@ tools: - 13022c3d3076 - 178bdbdb6d24 - 42ce70172b72 + - 45795f582ae9 - 5ef7ec16b04f - 79b885ce78d7 - a6fba3d92531 @@ -145,6 +147,7 @@ tools: revisions: - 3171f7f52576 - 3f94a2e3d513 + - 456d8ebb6a28 - 517464809c33 - 7f19559b8b55 - 858a65b52cf9 @@ -165,6 +168,7 @@ tools: - 39c21be8f8b9 - 6c95c380bfa7 - 75e15ba3b4c1 + - e9bf680c292b tool_panel_section_id: mapping tool_panel_section_label: Mapping - name: batched_lastz @@ -172,6 +176,7 @@ tools: revisions: - 007990f98551 - 103538753e81 + - 43e72105f473 - 78c4cef2b5a9 - a68e128cdb1a tool_panel_section_id: mapping diff --git a/usegalaxy.org/metagenomic_analysis.yml.lock b/usegalaxy.org/metagenomic_analysis.yml.lock index cd9edaa9..4e4e748f 100644 --- a/usegalaxy.org/metagenomic_analysis.yml.lock +++ b/usegalaxy.org/metagenomic_analysis.yml.lock @@ -474,6 +474,7 @@ tools: - 1a6cdf55390f - 289b3807e80c - ec368db926f4 + - ef65b083bd0c - fd69c607b43f tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis @@ -541,6 +542,7 @@ tools: - name: bracken owner: iuc revisions: + - 0c7b6eb7e752 - 1d4bd12f01cf tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis @@ -548,5 +550,6 @@ tools: owner: iuc revisions: - 76bf12b928f4 + - d4fbfd31696c tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis diff --git a/usegalaxy.org/motif.yml.lock b/usegalaxy.org/motif.yml.lock index 413a30b7..c7eb6b4c 100644 --- a/usegalaxy.org/motif.yml.lock +++ b/usegalaxy.org/motif.yml.lock @@ -9,6 +9,7 @@ tools: - 19237efe98d1 - 3f0dd362b755 - 57e5d9382f36 + - 7ce0fe11b411 - 9dd5373f6a5a - e7242484929c tool_panel_section_id: motif @@ -16,6 +17,7 @@ tools: - name: meme_fimo owner: iuc revisions: + - 01f5d04846c4 - 0c5239d1aa65 - c1a9a297ba8b - c5209f38700d @@ -32,6 +34,7 @@ tools: owner: iuc revisions: - 164067a66a5c + - 47e7ae719765 - 5f95d385a33c - ff2f53a32d0e tool_panel_section_id: motif diff --git a/usegalaxy.org/multiple_alignments.yml.lock b/usegalaxy.org/multiple_alignments.yml.lock index 185db97e..dda27524 100644 --- a/usegalaxy.org/multiple_alignments.yml.lock +++ b/usegalaxy.org/multiple_alignments.yml.lock @@ -32,6 +32,7 @@ tools: owner: rnateam revisions: - 6f28e90db932 + - 8e649f27aa0d - a65296ffb4a0 - aaefa93c2dd2 - bf28a8cff401 diff --git a/usegalaxy.org/nanopore.yml.lock b/usegalaxy.org/nanopore.yml.lock index 708fa716..f9d5bc2d 100644 --- a/usegalaxy.org/nanopore.yml.lock +++ b/usegalaxy.org/nanopore.yml.lock @@ -101,6 +101,7 @@ tools: - 645159bcee2d - 7b379e98b9a9 - a02b8b3f5a0c + - a38bdcec9e4c - a3c4fe6f49ab - edbb6c5028f5 tool_panel_section_id: nanopore @@ -177,6 +178,7 @@ tools: - 0284be52bfcf - 276f5d8712d5 - 291923e6f276 + - 3e4f8642c77e - 3ee0ef312022 - 8d4f03b5fe9d - cb8dfd28c16f diff --git a/usegalaxy.org/proteomics.yml.lock b/usegalaxy.org/proteomics.yml.lock index 66730a10..101f9d6d 100644 --- a/usegalaxy.org/proteomics.yml.lock +++ b/usegalaxy.org/proteomics.yml.lock @@ -132,6 +132,7 @@ tools: - name: colabfold_msa owner: iuc revisions: + - 6fbd935575ce - 941f89a0c552 tool_panel_section_id: proteomics tool_panel_section_label: Proteomics @@ -139,5 +140,6 @@ tools: owner: iuc revisions: - 5f7a01f8ea28 + - 9d65257c56de tool_panel_section_id: proteomics tool_panel_section_label: Proteomics diff --git a/usegalaxy.org/rna_seq.yml.lock b/usegalaxy.org/rna_seq.yml.lock index c2c2d896..dafc85a1 100644 --- a/usegalaxy.org/rna_seq.yml.lock +++ b/usegalaxy.org/rna_seq.yml.lock @@ -24,6 +24,7 @@ tools: - 5bf899c13979 - 6e53e565fc6a - a8305cf0c951 + - ae2aad0a6d50 - 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