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Rsamtools cannot handle csi index? #17

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Mailinnia opened this issue Dec 1, 2020 · 0 comments
Open

Rsamtools cannot handle csi index? #17

Mailinnia opened this issue Dec 1, 2020 · 0 comments

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@Mailinnia
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Hi,

I'm working with the barley genome which has chromosomes exceeding the 2^29 length limit for creating a bai index.
I therefore need to make a csi index.

But Rsamtools seems not to be able to handle bam files that exceed this limit and it seems it cannot handle csi index.

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