Thresholds p-value and number of significant nodes not taken into account in TopAnat

[fbastian]

In GitLab by @fbastian on Feb 13, 2018, 13:39

In org.bgee.model.topanat.TopAnatRManager, see lines 189-191 in develop branch: p-value and number of significant nodes are taken into account to count the results, not to actually filter them (see line 169).

In /bgee-core/src/main/resources/R_scripts/topAnat_functions.R, we need to modify the function makeTable to accept these thresholds as arguments, and use them. Then we need to modify the call to this makeTable function.

@jwollbrett: do you feel like making this change? I guess it affects the R package as well. If you do make the change in the Java app, you need to checkout from branch archive_common_bgee_v13_and_later, since this problem also affects Bgee 13.
(I don't think it is absolutely necessary for the release, as the bug is there since a long time I think)

[fbastian]

In GitLab by @jwollbrett on Feb 15, 2018, 12:04

assigned to @jwollbrett

[fbastian]

In GitLab by @jwollbrett on Aug 30, 2018, 17:24

mentioned in commit 9b29945