diff --git a/SigProfilerExtractor.egg-info/PKG-INFO b/SigProfilerExtractor.egg-info/PKG-INFO index 21e04ad..042a744 100644 --- a/SigProfilerExtractor.egg-info/PKG-INFO +++ b/SigProfilerExtractor.egg-info/PKG-INFO @@ -1,6 +1,6 @@ Metadata-Version: 2.1 Name: SigProfilerExtractor -Version: 1.0.20 +Version: 1.1.0 Summary: Extracts mutational signatures from mutational catalogues Home-page: https://github.com/AlexandrovLab/SigProfilerExtractor.git Author: S Mishu Ashiqul Islam @@ -120,7 +120,7 @@ Description: [![Docs](https://img.shields.io/badge/docs-latest-blue.svg)](https: | **Decomposition** | | | | | | **de_novo_fit_penalty** | Float | Takes any positive float. Default is 0.02. Defines the weak (remove) thresh-hold cutoff to assign denovo signatures to a sample. | | | **nnls_add_penalty** | Float | Takes any positive float. Default is 0.05. Defines the strong (add) thresh-hold cutoff to assign COSMIC signatures to a sample. | - | | **nnls_remove_penalty** | Float | Takes any positive float. Default is 0.05. Defines the strong (add) thresh-hold cutoff to assign COSMIC signatures to a sample. | + | | **nnls_remove_penalty** | Float | Takes any positive float. Default is 0.01. Defines the weak (remove) thresh-hold cutoff to assign COSMIC signatures to a sample. | | | **initial_remove_penalty** | Float | Takes any positive float. Default is 0.05. Defines the initial weak (remove) thresh-hold cutoff to COSMIC assign signatures to a sample. | | | **refit_denovo_signatures** | Boolean | Default is True. If True, then refit the denovo signatures with nnls. | | | **make_decomposition_plots** | Boolean | Defualt is True. If True, Denovo to Cosmic sigantures decompostion plots will be created as a part the results. | diff --git a/SigProfilerExtractor.egg-info/requires.txt b/SigProfilerExtractor.egg-info/requires.txt index b1819b5..993a087 100644 --- a/SigProfilerExtractor.egg-info/requires.txt +++ b/SigProfilerExtractor.egg-info/requires.txt @@ -4,7 +4,7 @@ torch==1.5.1 numpy>=1.17.4 pandas>=0.25.3 nimfa>=1.1.0 -SigProfilerMatrixGenerator>=1.1.22 +SigProfilerMatrixGenerator>=1.1.23 sigProfilerPlotting>=1.1.8 pillow statsmodels>=0.9.0 diff --git a/SigProfilerExtractor/version.py b/SigProfilerExtractor/version.py index cb897fb..75d673d 100644 --- a/SigProfilerExtractor/version.py +++ b/SigProfilerExtractor/version.py @@ -1,7 +1,7 @@ # THIS FILE IS GENERATED FROM SIGPROFILEREXTRACTOR SETUP.PY -short_version = '1.0.20' -version = '1.0.20' +short_version = '1.1.0' +version = '1.1.0' Update = 'Heirarchy option deleted, clustering deleted and signatures orders by the mutation burden' \ No newline at end of file diff --git a/build/lib/SigProfilerExtractor/version.py b/build/lib/SigProfilerExtractor/version.py index cb897fb..75d673d 100644 --- a/build/lib/SigProfilerExtractor/version.py +++ b/build/lib/SigProfilerExtractor/version.py @@ -1,7 +1,7 @@ # THIS FILE IS GENERATED FROM SIGPROFILEREXTRACTOR SETUP.PY -short_version = '1.0.20' -version = '1.0.20' +short_version = '1.1.0' +version = '1.1.0' Update = 'Heirarchy option deleted, clustering deleted and signatures orders by the mutation burden' \ No newline at end of file diff --git a/setup.py b/setup.py index 84f5bee..e5d6042 100644 --- a/setup.py +++ b/setup.py @@ -8,7 +8,7 @@ if os.path.exists("dist"): shutil.rmtree("dist") -VERSION = '1.0.20' +VERSION = '1.1.0' with open('README.md') as f: @@ -33,7 +33,7 @@ def write_version_py(filename='SigProfilerExtractor/version.py'): 'numpy>=1.17.4', 'pandas>=0.25.3', 'nimfa>=1.1.0', - 'SigProfilerMatrixGenerator>=1.1.22', + 'SigProfilerMatrixGenerator>=1.1.23', 'sigProfilerPlotting>=1.1.8', 'pillow', 'statsmodels>=0.9.0',