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Also stumbled over this one. I think one should not rely on the master branch but download a specific release .. which should be the same as the humann version used in the bioconda recipe (which then needs to be pinned).
Humann seems to have moved from bitbucket to GitHub so
wget https://bitbucket.org/biobakery/humann2/raw/d1ac153083d48a5384e3b3d3597b9e36b1a4606e/humann2/data/misc/map_infogo1000_uniref50.txt.gz
fails.
Is correct URL now: https://github.com/biobakery/humann/raw/master/humann/data/misc/map_go_uniref90.txt.gz ?
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