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group_humann2_uniref_abundances_to_GO_download_datasets.sh tries to access removed bitbucket files #12

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jj-umn opened this issue Jan 16, 2021 · 2 comments

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@jj-umn
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jj-umn commented Jan 16, 2021

Humann seems to have moved from bitbucket to GitHub so
wget https://bitbucket.org/biobakery/humann2/raw/d1ac153083d48a5384e3b3d3597b9e36b1a4606e/humann2/data/misc/map_infogo1000_uniref50.txt.gz
fails.

Is correct URL now: https://github.com/biobakery/humann/raw/master/humann/data/misc/map_go_uniref90.txt.gz ?

@jj-umn
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jj-umn commented Jan 16, 2021

@bernt-matthias
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Also stumbled over this one. I think one should not rely on the master branch but download a specific release .. which should be the same as the humann version used in the bioconda recipe (which then needs to be pinned).

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